| Transcript ID | Brain | Ovary | Placenta |
|---|---|---|---|
| ENST00000453386 | 1.548±0.00 | 5.456±0.00 | 6.277±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | transformer 2 beta homolog (Drosophila) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000453386  |
TRA2B-001 |
ENSG00000136527 |
9606 | - |
3:185915906-185938136  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008ZT | CIL_0008ZT_0001 | VISTA | 3:185444884-186046681 |
| CIL_0003YC | CIL_0003YC_0002 | CGP | 3:185643739-185938136 |
| CIL_0006RI | CIL_0006RI_0001 | CGP | 3:185915906-186110318 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0000375 | TAS | RNA splicing, via transesterification reactions |
| GO:0000381 | IDA | regulation of alternative mRNA splicing, via spliceosome |
| GO:0000398 | IDA | mRNA splicing, via spliceosome |
| GO:0003676 | IEA | nucleic acid binding |
| GO:0003729 | IDA | mRNA binding |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0044822 | IDA | poly(A) RNA binding |
| GO:0048026 | IDA | positive regulation of mRNA splicing, via spliceosome |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000161286
|
Tra2b-001 | protein_coding | Mus_musculus | 0 | 2431 |
|
ENSMUST00000023564
|
Tra2b-006 | protein_coding | Mus_musculus | 0 | 1777 |
|
ENSMUST00000162413
|
Tra2b-003 | nonsense_mediated_decay | Mus_musculus | 0 | 1749 |
|
ENSMUST00000120850
|
Gm14639-001 | processed_pseudogene | Mus_musculus | 0 | 1085 |
|
ENSMUST00000052888
|
Gm10254-201 | processed_pseudogene | Mus_musculus | 0 | 963 |
|
ENSMUST00000118304
|
Gm11957-001 | processed_pseudogene | Mus_musculus | 0 | 828 |
|
ENSMUST00000118107
|
Gm15667-001 | processed_pseudogene | Mus_musculus | 0 | 549 |
|
ENSMUST00000161774
|
Tra2b-005 | retained_intron | Mus_musculus | 0 | 512 |
|
ENSMUST00000159946
|
Tra2b-004 | processed_transcript | Mus_musculus | 0 | 261 |
|
ENSMUST00000160579
|
Tra2b-002 | retained_intron | Mus_musculus | 3e-22 | 111 |
