C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformer 2 beta homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456380 TRA2B-003 ENSG00000136527 9606 - 3:185917330-185938029 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyMuscleOvaryPlacentaTestisENST00000456380
Transcript ID Adipose Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000456380 12.484±0.00 1.412±0.00 9.794±2.91 8.034±1.08 5.502±0.00 4.760±0.33 44.689±28.72 21.729±0.00 18.714±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0003YC CIL_0003YC_0002 CGP 3:185643739-185938136
CIL_0006RI CIL_0006RI_0001 CGP 3:185915906-186110318

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0048026 IDA positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162413 Tra2b-003 nonsense_mediated_decay Mus_musculus 0 2342
ENSMUST00000023564 Tra2b-006 protein_coding Mus_musculus 0 1749
ENSMUST00000161286 Tra2b-001 protein_coding Mus_musculus 0 1749
ENSMUST00000120850 Gm14639-001 processed_pseudogene Mus_musculus 0 1046
ENSMUST00000052888 Gm10254-201 processed_pseudogene Mus_musculus 0 896
ENSMUST00000118304 Gm11957-001 processed_pseudogene Mus_musculus 0 828
ENSMUST00000160579 Tra2b-002 retained_intron Mus_musculus 0 623
ENSMUST00000118107 Gm15667-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000159946 Tra2b-004 processed_transcript Mus_musculus 0 514
ENSMUST00000161774 Tra2b-005 retained_intron Mus_musculus 0 512

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