C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and senescent cell antigen like domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025254 Lims2-201 ENSMUSG00000024395 10090 + 18:31931507-31958619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025254 67.350±39.09 28.544±4.39 106.801±49.12 1.137±0.25 28.209±11.30 34.825±1.81 35.403±4.62 26.179±6.93 21.924±16.39 71.259±8.01 6.964±2.80 18.252±7.28 17.951±15.47 13.354±7.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000197 CIL_000197_0002 CGP 18:31931507-31958619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0016337 IGI single organismal cell-cell adhesion
GO:0043066 IGI negative regulation of apoptotic process
GO:0045216 IGI cell-cell junction organization
GO:0050680 IGI negative regulation of epithelial cell proliferation
GO:2000178 IGI negative regulation of neural precursor cell proliferation
GO:2000346 IGI negative regulation of hepatocyte proliferation
GO:2001046 IGI positive regulation of integrin-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324938 LIMS2-005 protein_coding Homo_sapiens 0 1242
ENST00000355119 LIMS2-001 protein_coding Homo_sapiens 0 1275
ENST00000409254 LIMS2-012 protein_coding Homo_sapiens 0 841
ENST00000409286 LIMS2-009 protein_coding Homo_sapiens 0 846
ENST00000409455 LIMS2-004 protein_coding Homo_sapiens 0 1242
ENST00000409754 LIMS2-008 protein_coding Homo_sapiens 0 841
ENST00000409808 LIMS2-002 protein_coding Homo_sapiens 0 1242
ENST00000410011 LIMS2-003 protein_coding Homo_sapiens 0 1242
ENST00000410038 LIMS2-006 protein_coding Homo_sapiens 0 841
ENST00000413578 LIMS2-013 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000426981 LIMS2-007 protein_coding Homo_sapiens 0 457
ENST00000466410 LIMS2-011 retained_intron Homo_sapiens 0 931
ENST00000469300 LIMS2-014 retained_intron Homo_sapiens 0 427
ENST00000476932 LIMS2-017 retained_intron Homo_sapiens 0 992
ENST00000484252 LIMS2-015 retained_intron Homo_sapiens 0 342
ENST00000545738 LIMS2-018 protein_coding Homo_sapiens 0 1242
ENST00000582671 LIMS2-020 processed_transcript Homo_sapiens 0 291
ENST00000612860 LIMS2-201 protein_coding Homo_sapiens 0 841

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