C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 18 (vesicular monoamine), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026084 Slc18a2-201 ENSMUSG00000025094 10090 + 19:59260878-59296012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026084
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026084 0.171±0.08 6.646±3.78 0.482±0.00 9.610±6.17 0.628±0.35 1.350±0.85 0.487±0.15 0.833±0.38 0.698±0.63 0.383±0.18 0.414±0.05 42.011±20.23 1.209±0.59 0.234±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YJ CIL_0007YJ_0002 VISTA 19:58832961-59434097
CIL_0007ZF CIL_0007ZF_0002 VISTA 19:58834549-59435577
CIL_0008H6 CIL_0008H6_0002 VISTA 19:58967128-59568278
CIL_0007KI CIL_0007KI_0003 UCNEbase 19:59043463-60359839
CIL_0008MK CIL_0008MK_0002 VISTA 19:59123214-59725570
CIL_0008G5 CIL_0008G5_0002 VISTA 19:59165505-59766798
CIL_0007ZG CIL_0007ZG_0002 VISTA 19:59166736-59767688
CIL_0008EZ CIL_0008EZ_0002 VISTA 19:59169921-59771302
CIL_0004GZ CIL_0004GZ_0003 CGP 19:59219648-59296012
CIL_00046Y CIL_00046Y_0003 CGP 19:59260878-59345780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001975 IMP response to amphetamine
GO:0005275 IEA amine transmembrane transporter activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006836 IEA neurotransmitter transport
GO:0006837 IEA serotonin transport
GO:0006855 IEA drug transmembrane transport
GO:0007568 IEA aging
GO:0007626 IMP locomotory behavior
GO:0008021 IEA synaptic vesicle
GO:0008144 IEA drug binding
GO:0009635 IEA response to herbicide
GO:0009636 IMP response to toxic substance
GO:0009791 IMP post-embryonic development
GO:0010038 IEA response to metal ion
GO:0010043 IEA response to zinc ion
GO:0015222 IEA serotonin transmembrane transporter activity
GO:0015238 IEA drug transmembrane transporter activity
GO:0015844 IEA monoamine transport
GO:0016021 IEA integral component of membrane
GO:0016265 IMP death
GO:0019899 IEA enzyme binding
GO:0030073 IEA insulin secretion
GO:0030672 IEA synaptic vesicle membrane
GO:0031045 IEA dense core granule
GO:0031072 IEA heat shock protein binding
GO:0032456 IEA endocytic recycling
GO:0035690 IEA cellular response to drug
GO:0042220 IEA response to cocaine
GO:0042493 IEA response to drug
GO:0042593 IEA glucose homeostasis
GO:0042594 IEA response to starvation
GO:0042995 IEA cell projection
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0043195 IEA terminal bouton
GO:0043679 IEA axon terminus
GO:0044297 IEA cell body
GO:0051412 IEA response to corticosterone
GO:0051589 IEA negative regulation of neurotransmitter transport
GO:0071242 IEA cellular response to ammonium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000025466 slc18a2-001 protein_coding Danio_rerio 0 630
ENST00000298472 SLC18A2-001 protein_coding Homo_sapiens 0 2209
ENST00000334464 PDZD8-001 protein_coding Homo_sapiens 0 388
ENST00000497497 SLC18A2-002 processed_transcript Homo_sapiens 0 1611

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