C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: STE20-related kinase adaptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000194530 STRADB-001 ENSG00000082146 9606 + 2:201451669-201480846 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000194530
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000194530 10.519±0.00 4.509±0.00 15.309±0.00 6.841±1.73 6.037±0.00 6.959±0.00 9.583±3.16 4.917±1.26 7.809±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089O CIL_00089O_0001 VISTA 2:201132231-201734391
CIL_0000JJ CIL_0000JJ_0002 CGP 2:201377207-201480846
CIL_00020Q CIL_00020Q_0001 CGP 2:201387858-201619178

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0004672 IEA protein kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006468 IEA protein phosphorylation
GO:0006611 IDA protein export from nucleus
GO:0007050 TAS cell cycle arrest
GO:0007254 IEA JNK cascade
GO:0008286 TAS insulin receptor signaling pathway
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0032147 IDA activation of protein kinase activity
GO:2001240 IEA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027185 Stradb-001 protein_coding Mus_musculus 0 1888
ENSMUST00000153990 Stradb-003 nonsense_mediated_decay Mus_musculus 0 1633
ENSMUST00000123301 Stradb-002 nonsense_mediated_decay Mus_musculus 0 813
ENSMUST00000114296 Stradb-004 protein_coding Mus_musculus 0 811
ENSMUST00000152318 Stradb-008 protein_coding Mus_musculus 0 542
ENSMUST00000147637 Stradb-005 retained_intron Mus_musculus 0 322
ENSMUST00000123965 Stradb-006 retained_intron Mus_musculus 0 261

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