C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neutral sphingomyelinase (N-SMase) activation associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029910 Nsmaf-001 ENSMUSG00000028245 10090 - 4:6396207-6454271 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029910
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029910 11.441±3.61 10.962±2.23 20.144±3.08 10.839±2.18 15.630±1.41 7.669±1.65 11.045±1.97 9.002±0.48 10.822±7.76 15.237±1.41 10.901±2.63 22.434±2.79 9.794±0.80 3.016±0.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T7 CIL_0001T7_0002 CGP 4:6265612-6408423
CIL_0002RG CIL_0002RG_0002 CGP 4:6365650-6454271
CIL_0001SZ CIL_0001SZ_0002 CGP 4:6396207-6991557

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005123 TAS death receptor binding
GO:0016230 IEA sphingomyelin phosphodiesterase activator activity
GO:0043065 IEA positive regulation of apoptotic process
GO:0043085 IEA positive regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000038176 NSMAF-001 protein_coding Homo_sapiens 0 3336
ENST00000427130 NSMAF-002 protein_coding Homo_sapiens 0 3254
ENST00000517612 NSMAF-010 retained_intron Homo_sapiens 0 604
ENST00000518159 NSMAF-003 nonsense_mediated_decay Homo_sapiens 4e-35 152
ENST00000518229 NSMAF-004 nonsense_mediated_decay Homo_sapiens 3e-35 152
ENST00000519166 NSMAF-009 retained_intron Homo_sapiens 0 211
ENST00000519174 NSMAF-014 retained_intron Homo_sapiens 8e-32 141
ENST00000519227 NSMAF-006 retained_intron Homo_sapiens 0 503
ENST00000519858 NSMAF-012 processed_transcript Homo_sapiens 0 998
ENST00000521712 NSMAF-015 retained_intron Homo_sapiens 0 427
ENST00000521972 NSMAF-011 retained_intron Homo_sapiens 0 433
ENST00000522645 NSMAF-005 retained_intron Homo_sapiens 0 435
ENST00000523106 NSMAF-007 retained_intron Homo_sapiens 0 665
ENST00000523177 NSMAF-013 processed_transcript Homo_sapiens 0 529
ENST00000523982 NSMAF-016 processed_transcript Homo_sapiens 0 603
ENST00000524148 NSMAF-008 retained_intron Homo_sapiens 0 213

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