C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neutral sphingomyelinase (N-SMase) activation associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000038176 NSMAF-001 ENSG00000035681 9606 - 8:58583504-58659844 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000038176
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000038176 5.750±0.00 6.152±0.00 1.132±0.00 1.258±0.00 2.921±1.91 4.016±0.48 2.510±1.50 1.356±0.74 0.764±0.00 3.515±0.11 2.927±0.00 3.340±1.27 3.677±1.28 2.411±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RG CIL_0002RG_0001 CGP 8:58552924-58659844
CIL_0008PQ CIL_0008PQ_0001 VISTA 8:58557235-59160028
CIL_0001SZ CIL_0001SZ_0001 CGP 8:58583504-59119208

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005057 TAS receptor signaling protein activity
GO:0005515 IPI:IEA protein binding
GO:0005737 TAS cytoplasm
GO:0006672 TAS ceramide metabolic process
GO:0007165 TAS signal transduction
GO:0035556 TAS intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029910 Nsmaf-001 protein_coding Mus_musculus 0 3336
ENSMUST00000143566 Nsmaf-003 processed_transcript Mus_musculus 0 2235
ENSMUST00000143704 Nsmaf-002 retained_intron Mus_musculus 0 2015
ENSMUST00000149015 Nsmaf-010 retained_intron Mus_musculus 0 708
ENSMUST00000156283 Nsmaf-007 processed_transcript Mus_musculus 0 625
ENSMUST00000156078 Nsmaf-004 retained_intron Mus_musculus 0 534
ENSMUST00000156715 Nsmaf-006 processed_transcript Mus_musculus 0 490
ENSMUST00000143983 Nsmaf-009 retained_intron Mus_musculus 0 416
ENSMUST00000124344 Nsmaf-011 protein_coding Mus_musculus 0 411
ENSMUST00000029912 Sdcbp-001 protein_coding Mus_musculus 0.000000008 68

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