C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA segment, Chr 1, Pasteur Institute 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045108 D1Pas1-001 ENSMUSG00000039224 10090 + 1:186967416-186970627 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverOvaryPlacentaTestisENSMUST00000045108
Transcript ID Bladder Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000045108 0.007±0.00 0.008±0.00 0.018±0.00 0.023±0.00 0.032±0.01 0.008±0.00 0.017±0.00 0.112±0.06 60.815±29.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086U CIL_00086U_0002 VISTA 1:186608316-187210077
CIL_00086S CIL_00086S_0002 VISTA 1:186622310-187223505
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182
CIL_000994 CIL_000994_0002 VISTA 1:186948277-187549469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008026 IEA ATP-dependent helicase activity
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399959 DDX3X-001 protein_coding Homo_sapiens 0 2695
ENST00000418231 DDX3YP1-001 processed_pseudogene Homo_sapiens 0 1284
ENST00000441189 DDX3X-005 protein_coding Homo_sapiens 0 481
ENST00000457138 DDX3X-201 protein_coding Homo_sapiens 0 2543
ENST00000478993 DDX3X-002 nonsense_mediated_decay Homo_sapiens 0 2451
ENST00000480592 DDX3X-003 processed_transcript Homo_sapiens 1e-31 141
ENST00000506389 DDX3YP3-001 processed_pseudogene Homo_sapiens 0 1467
ENST00000542215 DDX3X-004 processed_transcript Homo_sapiens 0 994
ENST00000611968 DDX3X-012 protein_coding Homo_sapiens 0 424
ENST00000615742 DDX3X-011 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000616050 DDX3X-013 processed_transcript Homo_sapiens 0 584

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