C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049241 Hoxb4-001 ENSMUSG00000038692 10090 + 11:96318267-96321638 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049241 1.988±1.01 9.444±0.92 4.449±1.16 1.563±1.97 3.459±1.50 1.515±0.94 0.318±0.10 4.249±2.17 0.446±0.16 5.774±0.75 0.234±0.06 2.212±0.82 0.460±0.17 0.250±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0004DH CIL_0004DH_0002 CGP 11:96303336-96321638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002011 IGI morphogenesis of an epithelial sheet
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008283 IMP cell proliferation
GO:0009952 IGI anterior/posterior pattern specification
GO:0030097 IMP hemopoiesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048103 IDA somatic stem cell division
GO:0048536 IMP spleen development
GO:0048539 IMP bone marrow development
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048705 IGI skeletal system morphogenesis
GO:0060216 IGI definitive hemopoiesis
GO:0060218 IEA hematopoietic stem cell differentiation
GO:2000738 IEA positive regulation of stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 8e-39 165
ENST00000225648 HOXB6-002 protein_coding Homo_sapiens 3e-35 154
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 5.04467e-44 183
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 8.40779e-45 185
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 2e-23 115
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 0 1755
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 3e-23 115
ENST00000464266 HOXB3-010 retained_intron Homo_sapiens 0.0000000001 71
ENST00000465120 HOXB3-009 protein_coding Homo_sapiens 0.000000000000006 86
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 1e-21 110
ENST00000470193 HOXB6-003 processed_transcript Homo_sapiens 4e-18 95
ENST00000484302 HOXB6-001 protein_coding Homo_sapiens 3e-35 154
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 6e-39 165
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 3e-23 115

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