C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000332503 HOXB4-001 ENSG00000182742 9606 - 17:48575513-48580111 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000332503
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000332503 2.448±0.00 1.499±0.00 6.048±0.00 0.262±0.16 0.074±0.00 0.195±0.00 2.677±2.05 0.329±0.00 1.396±0.22 1.055±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0002011 IEA morphogenesis of an epithelial sheet
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008283 IEA cell proliferation
GO:0009952 IEA anterior/posterior pattern specification
GO:0030097 IEA hemopoiesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048103 IEA somatic stem cell division
GO:0048536 IEA spleen development
GO:0048539 IEA bone marrow development
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048705 IEA skeletal system morphogenesis
GO:0060216 IEA definitive hemopoiesis
GO:0060218 IDA hematopoietic stem cell differentiation
GO:2000738 IDA positive regulation of stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049241 Hoxb4-001 protein_coding Mus_musculus 0 1755
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 0 228
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 0 228
ENSMUST00000048715 Hoxa7-201 protein_coding Mus_musculus 4.99997e-41 174
ENSMUST00000134367 Hoxa7-004 protein_coding Mus_musculus 4.99997e-41 174
ENSMUST00000153280 Hoxa7-002 nonsense_mediated_decay Mus_musculus 4.99997e-41 174
ENSMUST00000062829 Hoxa6-001 protein_coding Mus_musculus 2e-39 169
ENSMUST00000114434 Hoxa3-001 protein_coding Mus_musculus 7e-30 137
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 4e-27 128
ENSMUST00000144040 Hoxd4-002 processed_transcript Mus_musculus 4e-27 128
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 3e-23 115
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 3e-23 115
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 3e-23 115
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 3e-23 115
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 3e-23 115
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 7e-20 104
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 7e-20 104
ENSMUST00000123805 Hoxb1-002 processed_transcript Mus_musculus 1e-16 94
ENSMUST00000019117 Hoxb1-001 protein_coding Mus_musculus 1e-16 94

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