C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coatomer protein complex, subunit gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049966 Copg1-003 ENSMUSG00000030058 10090 + 6:87887928-87890759 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000049966
Transcript ID Brain
ENSMUST00000049966 20.132±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000312 CIL_000312_0002 CGP 6:87842615-87913595
CIL_00030Z CIL_00030Z_0002 CGP 6:87887814-87936629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000043660 copg2-001 protein_coding Danio_rerio 0 248
ENST00000314797 COPG1-001 protein_coding Homo_sapiens 0 449
ENST00000330992 COPG2-003 protein_coding Homo_sapiens 9.99967e-42 176
ENST00000425248 COPG2-001 protein_coding Homo_sapiens 9.99967e-42 176
ENST00000504350 COPG1-005 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000513965 COPG1-004 retained_intron Homo_sapiens 0 346
ENST00000515725 COPG1-002 retained_intron Homo_sapiens 0 346

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