C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coatomer protein complex, subunit gamma 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425248 COPG2-001 ENSG00000158623 9606 - 7:130506238-130668748 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000425248
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000425248 8.507±0.00 5.359±0.00 0.719±0.00 5.680±0.00 3.142±0.00 4.433±0.73 3.174±1.84 3.903±2.83 2.963±1.07 4.399±1.01 4.466±3.62 11.062±6.57 14.141±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PP CIL_0008PP_0001 VISTA 7:130073108-130674619
CIL_0006OS CIL_0006OS_0001 CGP 7:130393771-130506296
CIL_000271 CIL_000271_0001 CGP 7:130486171-130668748
CIL_00027C CIL_00027C_0001 CGP 7:130506238-130687432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005488 IEA binding
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006891 IDA intra-Golgi vesicle-mediated transport
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030126 IDA:IEA COPI vesicle coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048774 Copg2-201 protein_coding Mus_musculus 0 3749
ENSMUST00000166192 Copg2-202 protein_coding Mus_musculus 0 1670
ENSDART00000043660 copg2-001 protein_coding Danio_rerio 0 1445
ENSMUST00000135230 Copg2-001 protein_coding Mus_musculus 0 1144
ENSMUST00000122833 Copg2-006 retained_intron Mus_musculus 0 1062
ENSMUST00000131256 Copg2-002 processed_transcript Mus_musculus 0 1026
ENSMUST00000113607 Copg1-001 protein_coding Mus_musculus 0 953
ENSMUST00000133916 Copg2-004 protein_coding Mus_musculus 0 867
ENSMUST00000149409 Copg1-006 retained_intron Mus_musculus 0 357
ENSMUST00000149907 Copg1-004 retained_intron Mus_musculus 0 228
ENSMUST00000049966 Copg1-003 protein_coding Mus_musculus 9.99967e-42 176
ENSMUST00000134137 Copg2-003 processed_transcript Mus_musculus 1e-36 159
ENSMUST00000137717 Copg1-002 retained_intron Mus_musculus 0.00006 55

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