C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055833 Atf2-005 ENSMUSG00000027104 10090 - 2:73816509-73892614 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000055833
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000055833 2.551±0.68 1.968±0.00 3.122±0.00 2.969±0.00 1.468±0.51 1.662±0.53 1.221±0.00 3.839±0.80 0.421±0.01 2.601±0.00 2.777±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HB CIL_0001HB_0002 CGP 2:73610660-73892639
CIL_0001H6 CIL_0001H6_0002 CGP 2:73816509-73911326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001102 IEA RNA polymerase II activating transcription factor binding
GO:0003151 IMP outflow tract morphogenesis
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 ISO sequence-specific DNA binding transcription factor activity
GO:0004402 ISS histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0005741 ISS mitochondrial outer membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006970 ISS response to osmotic stress
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008140 IEA cAMP response element binding protein binding
GO:0016020 IDA membrane
GO:0016573 IEA histone acetylation
GO:0019901 IEA protein kinase binding
GO:0031573 ISS intra-S DNA damage checkpoint
GO:0032915 IMP positive regulation of transforming growth factor beta2 production
GO:0035497 IEA cAMP response element binding
GO:0035861 ISS site of double-strand break
GO:0043565 IEA sequence-specific DNA binding
GO:0045444 IGI fat cell differentiation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046982 IEA protein heterodimerization activity
GO:0051091 ISS positive regulation of sequence-specific DNA binding transcription factor activity
GO:0060612 IGI adipose tissue development
GO:1902110 ISS positive regulation of mitochondrial membrane permeability involved in apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264110 ATF2-001 protein_coding Homo_sapiens 0 3557
ENST00000345739 ATF2-013 protein_coding Homo_sapiens 0 3053
ENST00000392544 ATF2-002 protein_coding Homo_sapiens 0 2495
ENST00000409437 ATF2-011 protein_coding Homo_sapiens 0 2174
ENST00000409499 ATF2-014 protein_coding Homo_sapiens 0 656
ENST00000409635 ATF2-012 protein_coding Homo_sapiens 0 2403
ENST00000409833 ATF2-009 protein_coding Homo_sapiens 0 1149
ENST00000413123 ATF2-017 processed_transcript Homo_sapiens 0 252
ENST00000415955 ATF2-007 nonsense_mediated_decay Homo_sapiens 0 1520
ENST00000417080 ATF2-003 nonsense_mediated_decay Homo_sapiens 0 1844
ENST00000421438 ATF2-005 nonsense_mediated_decay Homo_sapiens 0 1005
ENST00000426833 ATF2-201 protein_coding Homo_sapiens 0 3325
ENST00000428760 ATF2-008 nonsense_mediated_decay Homo_sapiens 0 1988
ENST00000429579 ATF2-006 nonsense_mediated_decay Homo_sapiens 0 1844
ENST00000435004 ATF2-021 protein_coding Homo_sapiens 0 739
ENST00000435231 ATF2-020 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000437522 ATF2-015 protein_coding Homo_sapiens 0 878
ENST00000445349 ATF2-016 processed_transcript Homo_sapiens 4.06377e-44 182
ENST00000456655 ATF2-004 nonsense_mediated_decay Homo_sapiens 0 1520
ENST00000478905 ATF2-018 retained_intron Homo_sapiens 0 455
ENST00000538946 ATF2-202 protein_coding Homo_sapiens 0 1845

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