C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060808 Plxnb2-201 ENSMUSG00000036606 10090 - 15:89155549-89170688 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartENSMUST00000060808
Transcript ID Breast Heart
ENSMUST00000060808 4.276±0.00 2.776±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009A CIL_00009A_0002 CGP 15:89142486-89171120

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0001932 IMP regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005887 IDA integral component of plasma membrane
GO:0007405 IMP neuroblast proliferation
GO:0007420 IMP brain development
GO:0008360 IMP regulation of cell shape
GO:0009986 IEA cell surface
GO:0017154 IMP semaphorin receptor activity
GO:0032319 IMP regulation of Rho GTPase activity
GO:0050772 IGI positive regulation of axonogenesis
GO:0070062 IEA extracellular vesicular exosome
GO:0071526 IMP semaphorin-plexin signaling pathway
GO:2001222 IMP regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296440 PLXNB1-001 protein_coding Homo_sapiens 0 254
ENST00000324093 PLXND1-001 protein_coding Homo_sapiens 8e-22 111
ENST00000358536 PLXNB1-003 protein_coding Homo_sapiens 0 254
ENST00000359337 PLXNB2-201 protein_coding Homo_sapiens 0 5452
ENST00000411680 PLXNB2-007 protein_coding Homo_sapiens 0 619
ENST00000425954 PLXNB2-003 protein_coding Homo_sapiens 0 446
ENST00000427829 PLXNB2-010 protein_coding Homo_sapiens 0 431
ENST00000432455 PLXNB2-012 protein_coding Homo_sapiens 0 1170
ENST00000449103 PLXNB2-001 protein_coding Homo_sapiens 0 5470
ENST00000456774 PLXNB1-005 protein_coding Homo_sapiens 0 254
ENST00000463165 PLXNB2-005 retained_intron Homo_sapiens 0 2519
ENST00000479701 PLXNB2-004 retained_intron Homo_sapiens 0 3083
ENST00000479818 PLXNB2-006 retained_intron Homo_sapiens 0 1101
ENST00000485535 PLXNB1-002 retained_intron Homo_sapiens 0 254
ENST00000492578 PLXNB2-011 retained_intron Homo_sapiens 0 429
ENST00000504524 PLXND1-002 retained_intron Homo_sapiens 0.000000000007 77
ENST00000506979 PLXND1-014 protein_coding Homo_sapiens 7e-23 111
ENST00000508630 PLXND1-016 retained_intron Homo_sapiens 3e-16 90
ENST00000512744 PLXND1-005 nonsense_mediated_decay Homo_sapiens 0.00000000000002 86
ENST00000610984 PLXNB2-202 protein_coding Homo_sapiens 0 3164
ENST00000614805 PLXNB2-203 protein_coding Homo_sapiens 0 1722

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