C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062829 Hoxa6-001 ENSMUSG00000043219 10090 - 6:52206288-52208722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062829
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062829 1.335±0.59 0.959±0.00 0.563±0.53 0.847±0.50 3.711±0.25 0.106±0.00 1.024±0.00 0.044±0.03 0.645±0.20 0.494±0.06 2.562±0.99 0.185±0.06 0.145±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003PC CIL_0003PC_0002 CGP 6:52201754-52208722
CIL_0003P9 CIL_0003P9_0002 CGP 6:52206288-52221854

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 0 1127
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 0 195
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 0 228
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 0.000000000000003 88
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 8e-28 130
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 2e-39 169
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 1e-27 130
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0.0000000000003 82
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 0 730
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 0 228
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 1e-27 130

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