C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor AP-2 beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064976 Tfap2b-003 ENSMUSG00000025927 10090 + 1:19212054-19234624 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyTestisENSMUST00000064976
Transcript ID Adrenal Brain Breast Heart Kidney Testis
ENSMUST00000064976 2.153±0.98 0.289±0.00 1.156±0.00 0.023±0.01 1.653±0.00 0.126±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MC CIL_0007MC_0006 UCNEbase 1:18307438-19700223
CIL_000813 CIL_000813_0002 VISTA 1:18655282-19257504
CIL_00096L CIL_00096L_0002 VISTA 1:18806734-19407712
CIL_0005MY CIL_0005MY_0002 CGP 1:19103022-19238576
CIL_0005MX CIL_0005MX_0002 CGP 1:19208914-20618064

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001822 IMP kidney development
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0043524 IGI negative regulation of neuron apoptotic process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048485 IGI sympathetic nervous system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319516 TFAP2A-003 protein_coding Homo_sapiens 0 296
ENST00000344788 TFAP2B-002 protein_coding Homo_sapiens 0 754
ENST00000379604 TFAP2A-201 protein_coding Homo_sapiens 0 296
ENST00000379608 TFAP2A-005 protein_coding Homo_sapiens 0 296
ENST00000379613 TFAP2A-001 protein_coding Homo_sapiens 0 296
ENST00000393655 TFAP2B-001 protein_coding Homo_sapiens 0 2178
ENST00000482890 TFAP2A-007 protein_coding Homo_sapiens 0 296
ENST00000488193 TFAP2A-008 nonsense_mediated_decay Homo_sapiens 0 296
ENST00000489228 TFAP2B-003 processed_transcript Homo_sapiens 0 1066
ENST00000489805 TFAP2A-011 nonsense_mediated_decay Homo_sapiens 0 296

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