| Source ID |
Type |
Tax ID |
Position |
| TFAP2B |
UCNEbase |
9606 |
6:51233000-51284634  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007MC_0005 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MC_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MC_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000008196' => 'transcription factor AP-2 beta (activating enhancer binding protein 2 beta)',
'ENSG00000008197' => 'transcription factor AP-2 delta (activating enhancer binding protein 2 delta)',
'ENSG00000060303' => 'ribosomal protein S17 pseudogene 5',
'ENSG00000216913' => null,
'ENSG00000226733' => null,
'ENSG00000230204' => 'ferritin, heavy polypeptide 1 pseudogene 5',
'ENSG00000230472' => null,
'ENSG00000233470' => null,
'ENSMUSG00000025927' => 'transcription factor AP-2 beta',
'ENSMUSG00000042596' => 'transcription factor AP-2, delta',
'ENSMUSG00000060128' => 'predicted gene 10075',
'ENSMUSG00000084668' => 'predicted gene, 24633',
'ENSMUSG00000088800' => 'predicted gene, 24075',
'ENSMUSG00000089787' => 'predicted gene 15825',
'ENSMUSG00000099433' => 'predicted gene 28344',
'ENSMUSG00000100204' => 'predicted gene 4849',
'ENSMUSG00000100538' => 'predicted gene 28340',
'ENSMUSG00000100720' => null,
'ENSMUSG00000101117' => 'predicted gene 28341',
'ENSMUSG00000101306' => 'predicted gene 5252',
'ENSMUSG00000101644' => 'predicted gene 28343',
'ENSMUSG00000101738' => 'predicted gene 29006',
'ENSDARG00000012667' => 'transcription factor AP-2 beta',
'ENSDARG00000023272' => 'transcription factor AP-2 delta (activating enhancer binding protein 2 delta)',
'ENSDARG00000080287' => '5S ribosomal RNA',
'ENSDARG00000097548' => null
),
'gene_name_arr' => array(
'ENSG00000008196' => 'TFAP2B',
'ENSG00000008197' => 'TFAP2D',
'ENSG00000060303' => 'RPS17P5',
'ENSG00000216913' => 'RP4-753D5.3',
'ENSG00000226733' => 'RP11-397G17.1',
'ENSG00000230204' => 'FTH1P5',
'ENSG00000230472' => 'RP1-28O17.1',
'ENSG00000233470' => 'RP11-524K22.1',
'ENSMUSG00000025927' => 'Tfap2b',
'ENSMUSG00000042596' => 'Tfap2d',
'ENSMUSG00000060128' => 'Gm10075',
'ENSMUSG00000084668' => 'Gm24633',
'ENSMUSG00000088800' => 'Gm24075',
'ENSMUSG00000089787' => 'Gm15825',
'ENSMUSG00000099433' => 'RP23-122B3.2',
'ENSMUSG00000100204' => 'RP24-119I6.5',
'ENSMUSG00000100538' => 'RP24-119I6.2',
'ENSMUSG00000100720' => 'AC098736.2',
'ENSMUSG00000101117' => 'RP24-119I6.4',
'ENSMUSG00000101306' => 'RP24-284D7.1',
'ENSMUSG00000101644' => 'RP23-122B3.1',
'ENSMUSG00000101738' => 'RP24-108N24.1',
'ENSDARG00000012667' => 'tfap2b',
'ENSDARG00000023272' => 'tfap2d',
'ENSDARG00000080287' => '5S_rRNA',
'ENSDARG00000097548' => 'tfap2b'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 24 => 'Brain',
(int) 42 => 'Breast',
(int) 53 => 'Colon',
(int) 58 => 'Heart',
(int) 69 => 'Kidney',
(int) 84 => 'Liver',
(int) 95 => 'Lung',
(int) 101 => 'Muscle',
(int) 111 => 'Ovary',
(int) 123 => 'Placenta',
(int) 127 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 40,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000344788' => array(
'start' => '50818723',
'end' => '50828679',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2B-002'
),
'ENST00000393655' => array(
'start' => '50818723',
'end' => '50847613',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2B-001'
),
'ENST00000489228' => array(
'start' => '50821785',
'end' => '50823865',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2B-003'
),
'ENST00000008391' => array(
'start' => '50713828',
'end' => '50772988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2D-001'
),
'ENST00000492804' => array(
'start' => '50718042',
'end' => '50751274',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2D-002'
),
'ENST00000498293' => array(
'start' => '50857255',
'end' => '50857662',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS17P5-001'
),
'ENST00000402760' => array(
'start' => '50897615',
'end' => '50898225',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-753D5.3-001'
),
'ENST00000415106' => array(
'start' => '50093711',
'end' => '50099282',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-397G17.1-001'
),
'ENST00000425761' => array(
'start' => '50912712',
'end' => '50913256',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FTH1P5-001'
),
'ENST00000431394' => array(
'start' => '50587607',
'end' => '50636865',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-28O17.1-002'
),
'ENST00000454135' => array(
'start' => '50598591',
'end' => '50637205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-28O17.1-001'
),
'ENST00000426547' => array(
'start' => '50514035',
'end' => '50521104',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-524K22.1-001'
),
'ENSMUST00000027059' => array(
'start' => '19208914',
'end' => '19238576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-001'
),
'ENSMUST00000064976' => array(
'start' => '19212054',
'end' => '19234624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-003'
),
'ENSMUST00000186972' => array(
'start' => '19213879',
'end' => '19219253',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tfap2b-005'
),
'ENSMUST00000187754' => array(
'start' => '19208960',
'end' => '19238083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-002'
),
'ENSMUST00000191068' => array(
'start' => '19212306',
'end' => '19214442',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tfap2b-004'
),
'ENSMUST00000037294' => array(
'start' => '19103022',
'end' => '19166346',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2d-001'
),
'ENSMUST00000149505' => array(
'start' => '19107181',
'end' => '19148367',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tfap2d-002'
),
'ENSMUST00000073196' => array(
'start' => '19153310',
'end' => '19153966',
'transcript_biotype' => 'pseudogene',
'transcript_name' => 'Gm10075-201'
),
'ENSMUST00000122719' => array(
'start' => '19513855',
'end' => '19513919',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24633-201'
),
'ENSMUST00000158175' => array(
'start' => '18969762',
'end' => '18969833',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24075-201'
),
'ENSMUST00000159108' => array(
'start' => '19063300',
'end' => '19104840',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15825-001'
),
'ENSMUST00000185704' => array(
'start' => '19062857',
'end' => '19063135',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-122B3.2-001'
),
'ENSMUST00000188428' => array(
'start' => '19330939',
'end' => '19333184',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-119I6.5-001'
),
'ENSMUST00000189218' => array(
'start' => '19242725',
'end' => '19243769',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-119I6.2-001'
),
'ENSMUST00000162030' => array(
'start' => '19153422',
'end' => '19153966',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC098736.2-001'
),
'ENSMUST00000190883' => array(
'start' => '19320226',
'end' => '19320697',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-119I6.4-001'
),
'ENSMUST00000189030' => array(
'start' => '18708428',
'end' => '18709336',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-284D7.1-001'
),
'ENSMUST00000185386' => array(
'start' => '19037266',
'end' => '19037377',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-122B3.1-001'
),
'ENSMUST00000187966' => array(
'start' => '18307824',
'end' => '18313906',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-108N24.1-001'
),
'ENSDART00000013003' => array(
'start' => '48367978',
'end' => '48384457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-201'
),
'ENSDART00000024898' => array(
'start' => '48367978',
'end' => '48386117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-202'
),
'ENSDART00000060539' => array(
'start' => '48367978',
'end' => '48386071',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-203'
),
'ENSDART00000132105' => array(
'start' => '48367977',
'end' => '48386887',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-001'
),
'ENSDART00000135380' => array(
'start' => '48380540',
'end' => '48386108',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-002'
),
'ENSDART00000138860' => array(
'start' => '48382217',
'end' => '48384457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-003'
),
'ENSDART00000031167' => array(
'start' => '48397098',
'end' => '48411961',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2d-001'
),
'ENSDART00000117338' => array(
'start' => '48439044',
'end' => '48439166',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.30-201'
),
'ENSDART00000154114' => array(
'start' => '48347859',
'end' => '48383937',
'transcript_biotype' => 'antisense',
'transcript_name' => 'tfap2b-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MC_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MC_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MC_0001' => array(
'genes_in_region' => array(
'ENSG00000008196' => array(
[maximum depth reached]
),
'ENSG00000008197' => array(
[maximum depth reached]
),
'ENSG00000060303' => array(
[maximum depth reached]
),
'ENSG00000216913' => array(
[maximum depth reached]
),
'ENSG00000226733' => array(
[maximum depth reached]
),
'ENSG00000230204' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Ovary',
(int) 2 => 'Adipose',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Ovary',
(int) 14 => 'Breast',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Bladder',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Testis'
)
),
'CIL_0007MC_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000025927' => array(
[maximum depth reached]
),
'ENSMUSG00000042596' => array(
[maximum depth reached]
),
'ENSMUSG00000060128' => array(
[maximum depth reached]
),
'ENSMUSG00000089787' => array(
[maximum depth reached]
),
'ENSMUSG00000099433' => array(
[maximum depth reached]
),
'ENSMUSG00000100204' => array(
[maximum depth reached]
),
'ENSMUSG00000100538' => array(
[maximum depth reached]
),
'ENSMUSG00000100720' => array(
[maximum depth reached]
),
'ENSMUSG00000101738' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Testis',
(int) 9 => 'Adrenal',
(int) 10 => 'Brain',
(int) 11 => 'Breast',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Breast',
(int) 17 => 'Kidney',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adipose',
(int) 32 => 'Adrenal',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Ovary',
(int) 38 => 'Adipose',
(int) 39 => 'Brain',
(int) 40 => 'Liver',
(int) 41 => 'Brain',
(int) 42 => 'Adipose',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Lung',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Testis'
)
),
'CIL_0007MC_0007' => array(
'genes_in_region' => array(
'ENSDARG00000012667' => array(
[maximum depth reached]
),
'ENSDARG00000023272' => array(
[maximum depth reached]
),
'ENSDARG00000097548' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Kidney',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Brain',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000008196' => 'transcription factor AP-2 beta (activating enhancer binding protein 2 beta)',
'ENSG00000008197' => 'transcription factor AP-2 delta (activating enhancer binding protein 2 delta)',
'ENSG00000060303' => 'ribosomal protein S17 pseudogene 5',
'ENSG00000216913' => null,
'ENSG00000226733' => null,
'ENSG00000230204' => 'ferritin, heavy polypeptide 1 pseudogene 5',
'ENSG00000230472' => null,
'ENSG00000233470' => null,
'ENSMUSG00000025927' => 'transcription factor AP-2 beta',
'ENSMUSG00000042596' => 'transcription factor AP-2, delta',
'ENSMUSG00000060128' => 'predicted gene 10075',
'ENSMUSG00000084668' => 'predicted gene, 24633',
'ENSMUSG00000088800' => 'predicted gene, 24075',
'ENSMUSG00000089787' => 'predicted gene 15825',
'ENSMUSG00000099433' => 'predicted gene 28344',
'ENSMUSG00000100204' => 'predicted gene 4849',
'ENSMUSG00000100538' => 'predicted gene 28340',
'ENSMUSG00000100720' => null,
'ENSMUSG00000101117' => 'predicted gene 28341',
'ENSMUSG00000101306' => 'predicted gene 5252',
'ENSMUSG00000101644' => 'predicted gene 28343',
'ENSMUSG00000101738' => 'predicted gene 29006',
'ENSDARG00000012667' => 'transcription factor AP-2 beta',
'ENSDARG00000023272' => 'transcription factor AP-2 delta (activating enhancer binding protein 2 delta)',
'ENSDARG00000080287' => '5S ribosomal RNA',
'ENSDARG00000097548' => null
)
$gene_name_arr = array(
'ENSG00000008196' => 'TFAP2B',
'ENSG00000008197' => 'TFAP2D',
'ENSG00000060303' => 'RPS17P5',
'ENSG00000216913' => 'RP4-753D5.3',
'ENSG00000226733' => 'RP11-397G17.1',
'ENSG00000230204' => 'FTH1P5',
'ENSG00000230472' => 'RP1-28O17.1',
'ENSG00000233470' => 'RP11-524K22.1',
'ENSMUSG00000025927' => 'Tfap2b',
'ENSMUSG00000042596' => 'Tfap2d',
'ENSMUSG00000060128' => 'Gm10075',
'ENSMUSG00000084668' => 'Gm24633',
'ENSMUSG00000088800' => 'Gm24075',
'ENSMUSG00000089787' => 'Gm15825',
'ENSMUSG00000099433' => 'RP23-122B3.2',
'ENSMUSG00000100204' => 'RP24-119I6.5',
'ENSMUSG00000100538' => 'RP24-119I6.2',
'ENSMUSG00000100720' => 'AC098736.2',
'ENSMUSG00000101117' => 'RP24-119I6.4',
'ENSMUSG00000101306' => 'RP24-284D7.1',
'ENSMUSG00000101644' => 'RP23-122B3.1',
'ENSMUSG00000101738' => 'RP24-108N24.1',
'ENSDARG00000012667' => 'tfap2b',
'ENSDARG00000023272' => 'tfap2d',
'ENSDARG00000080287' => '5S_rRNA',
'ENSDARG00000097548' => 'tfap2b'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0001',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '50093187',
'seq_end' => '51124665',
'region_length' => '1031478',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0002',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51124673',
'seq_end' => '51126034',
'region_length' => '1361',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0003',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51126035',
'seq_end' => '51126105',
'region_length' => '70',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0004',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51126106',
'seq_end' => '51127540',
'region_length' => '1434',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0005',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51233000',
'seq_end' => '51284634',
'region_length' => '51634',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0006',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '18307438',
'seq_end' => '19700223',
'region_length' => '1392785',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0007',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '48330176',
'seq_end' => '48617223',
'region_length' => '287047',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0008',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA706',
'seq_start' => '32653',
'seq_end' => '33365',
'region_length' => '712',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 24 => 'Brain',
(int) 42 => 'Breast',
(int) 53 => 'Colon',
(int) 58 => 'Heart',
(int) 69 => 'Kidney',
(int) 84 => 'Liver',
(int) 95 => 'Lung',
(int) 101 => 'Muscle',
(int) 111 => 'Ovary',
(int) 123 => 'Placenta',
(int) 127 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 40
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000344788' => array(
'start' => '50818723',
'end' => '50828679',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2B-002'
),
'ENST00000393655' => array(
'start' => '50818723',
'end' => '50847613',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2B-001'
),
'ENST00000489228' => array(
'start' => '50821785',
'end' => '50823865',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2B-003'
),
'ENST00000008391' => array(
'start' => '50713828',
'end' => '50772988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2D-001'
),
'ENST00000492804' => array(
'start' => '50718042',
'end' => '50751274',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2D-002'
),
'ENST00000498293' => array(
'start' => '50857255',
'end' => '50857662',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS17P5-001'
),
'ENST00000402760' => array(
'start' => '50897615',
'end' => '50898225',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-753D5.3-001'
),
'ENST00000415106' => array(
'start' => '50093711',
'end' => '50099282',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-397G17.1-001'
),
'ENST00000425761' => array(
'start' => '50912712',
'end' => '50913256',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FTH1P5-001'
),
'ENST00000431394' => array(
'start' => '50587607',
'end' => '50636865',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-28O17.1-002'
),
'ENST00000454135' => array(
'start' => '50598591',
'end' => '50637205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-28O17.1-001'
),
'ENST00000426547' => array(
'start' => '50514035',
'end' => '50521104',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-524K22.1-001'
),
'ENSMUST00000027059' => array(
'start' => '19208914',
'end' => '19238576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-001'
),
'ENSMUST00000064976' => array(
'start' => '19212054',
'end' => '19234624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-003'
),
'ENSMUST00000186972' => array(
'start' => '19213879',
'end' => '19219253',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tfap2b-005'
),
'ENSMUST00000187754' => array(
'start' => '19208960',
'end' => '19238083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-002'
),
'ENSMUST00000191068' => array(
'start' => '19212306',
'end' => '19214442',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tfap2b-004'
),
'ENSMUST00000037294' => array(
'start' => '19103022',
'end' => '19166346',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2d-001'
),
'ENSMUST00000149505' => array(
'start' => '19107181',
'end' => '19148367',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tfap2d-002'
),
'ENSMUST00000073196' => array(
'start' => '19153310',
'end' => '19153966',
'transcript_biotype' => 'pseudogene',
'transcript_name' => 'Gm10075-201'
),
'ENSMUST00000122719' => array(
'start' => '19513855',
'end' => '19513919',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24633-201'
),
'ENSMUST00000158175' => array(
'start' => '18969762',
'end' => '18969833',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24075-201'
),
'ENSMUST00000159108' => array(
'start' => '19063300',
'end' => '19104840',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15825-001'
),
'ENSMUST00000185704' => array(
'start' => '19062857',
'end' => '19063135',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-122B3.2-001'
),
'ENSMUST00000188428' => array(
'start' => '19330939',
'end' => '19333184',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-119I6.5-001'
),
'ENSMUST00000189218' => array(
'start' => '19242725',
'end' => '19243769',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-119I6.2-001'
),
'ENSMUST00000162030' => array(
'start' => '19153422',
'end' => '19153966',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC098736.2-001'
),
'ENSMUST00000190883' => array(
'start' => '19320226',
'end' => '19320697',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-119I6.4-001'
),
'ENSMUST00000189030' => array(
'start' => '18708428',
'end' => '18709336',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-284D7.1-001'
),
'ENSMUST00000185386' => array(
'start' => '19037266',
'end' => '19037377',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-122B3.1-001'
),
'ENSMUST00000187966' => array(
'start' => '18307824',
'end' => '18313906',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-108N24.1-001'
),
'ENSDART00000013003' => array(
'start' => '48367978',
'end' => '48384457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-201'
),
'ENSDART00000024898' => array(
'start' => '48367978',
'end' => '48386117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-202'
),
'ENSDART00000060539' => array(
'start' => '48367978',
'end' => '48386071',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-203'
),
'ENSDART00000132105' => array(
'start' => '48367977',
'end' => '48386887',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-001'
),
'ENSDART00000135380' => array(
'start' => '48380540',
'end' => '48386108',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-002'
),
'ENSDART00000138860' => array(
'start' => '48382217',
'end' => '48384457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-003'
),
'ENSDART00000031167' => array(
'start' => '48397098',
'end' => '48411961',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2d-001'
),
'ENSDART00000117338' => array(
'start' => '48439044',
'end' => '48439166',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.30-201'
),
'ENSDART00000154114' => array(
'start' => '48347859',
'end' => '48383937',
'transcript_biotype' => 'antisense',
'transcript_name' => 'tfap2b-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MC_0001' => array(
'genes_in_region' => array(
'ENSG00000008196' => array(
[maximum depth reached]
),
'ENSG00000008197' => array(
[maximum depth reached]
),
'ENSG00000060303' => array(
[maximum depth reached]
),
'ENSG00000216913' => array(
[maximum depth reached]
),
'ENSG00000226733' => array(
[maximum depth reached]
),
'ENSG00000230204' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Ovary',
(int) 2 => 'Adipose',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Ovary',
(int) 14 => 'Breast',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Bladder',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Testis'
)
),
'CIL_0007MC_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000025927' => array(
[maximum depth reached]
),
'ENSMUSG00000042596' => array(
[maximum depth reached]
),
'ENSMUSG00000060128' => array(
[maximum depth reached]
),
'ENSMUSG00000089787' => array(
[maximum depth reached]
),
'ENSMUSG00000099433' => array(
[maximum depth reached]
),
'ENSMUSG00000100204' => array(
[maximum depth reached]
),
'ENSMUSG00000100538' => array(
[maximum depth reached]
),
'ENSMUSG00000100720' => array(
[maximum depth reached]
),
'ENSMUSG00000101738' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Testis',
(int) 9 => 'Adrenal',
(int) 10 => 'Brain',
(int) 11 => 'Breast',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Breast',
(int) 17 => 'Kidney',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adipose',
(int) 32 => 'Adrenal',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Ovary',
(int) 38 => 'Adipose',
(int) 39 => 'Brain',
(int) 40 => 'Liver',
(int) 41 => 'Brain',
(int) 42 => 'Adipose',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Lung',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Testis'
)
),
'CIL_0007MC_0007' => array(
'genes_in_region' => array(
'ENSDARG00000012667' => array(
[maximum depth reached]
),
'ENSDARG00000023272' => array(
[maximum depth reached]
),
'ENSDARG00000097548' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Kidney',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Brain',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0005',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51233000',
'seq_end' => '51284634',
'region_length' => '51634',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
)
$gene_el = array(
'ENST00000425761' => array(
'Adipose' => array(
'average_FPKM' => '0.152',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.133',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.269',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.130',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.263',
'stddev_FPKM' => '0.17'
),
'Liver' => array(
'average_FPKM' => '0.206',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.320',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.203',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000230204'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.152',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.133',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.269',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.130',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.263',
'stddev_FPKM' => '0.17'
),
'Liver' => array(
'average_FPKM' => '0.206',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.320',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.203',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000425761'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MC_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MC_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000008196' => 'transcription factor AP-2 beta (activating enhancer binding protein 2 beta)',
'ENSG00000008197' => 'transcription factor AP-2 delta (activating enhancer binding protein 2 delta)',
'ENSG00000060303' => 'ribosomal protein S17 pseudogene 5',
'ENSG00000216913' => null,
'ENSG00000226733' => null,
'ENSG00000230204' => 'ferritin, heavy polypeptide 1 pseudogene 5',
'ENSG00000230472' => null,
'ENSG00000233470' => null,
'ENSMUSG00000025927' => 'transcription factor AP-2 beta',
'ENSMUSG00000042596' => 'transcription factor AP-2, delta',
'ENSMUSG00000060128' => 'predicted gene 10075',
'ENSMUSG00000084668' => 'predicted gene, 24633',
'ENSMUSG00000088800' => 'predicted gene, 24075',
'ENSMUSG00000089787' => 'predicted gene 15825',
'ENSMUSG00000099433' => 'predicted gene 28344',
'ENSMUSG00000100204' => 'predicted gene 4849',
'ENSMUSG00000100538' => 'predicted gene 28340',
'ENSMUSG00000100720' => null,
'ENSMUSG00000101117' => 'predicted gene 28341',
'ENSMUSG00000101306' => 'predicted gene 5252',
'ENSMUSG00000101644' => 'predicted gene 28343',
'ENSMUSG00000101738' => 'predicted gene 29006',
'ENSDARG00000012667' => 'transcription factor AP-2 beta',
'ENSDARG00000023272' => 'transcription factor AP-2 delta (activating enhancer binding protein 2 delta)',
'ENSDARG00000080287' => '5S ribosomal RNA',
'ENSDARG00000097548' => null
),
'gene_name_arr' => array(
'ENSG00000008196' => 'TFAP2B',
'ENSG00000008197' => 'TFAP2D',
'ENSG00000060303' => 'RPS17P5',
'ENSG00000216913' => 'RP4-753D5.3',
'ENSG00000226733' => 'RP11-397G17.1',
'ENSG00000230204' => 'FTH1P5',
'ENSG00000230472' => 'RP1-28O17.1',
'ENSG00000233470' => 'RP11-524K22.1',
'ENSMUSG00000025927' => 'Tfap2b',
'ENSMUSG00000042596' => 'Tfap2d',
'ENSMUSG00000060128' => 'Gm10075',
'ENSMUSG00000084668' => 'Gm24633',
'ENSMUSG00000088800' => 'Gm24075',
'ENSMUSG00000089787' => 'Gm15825',
'ENSMUSG00000099433' => 'RP23-122B3.2',
'ENSMUSG00000100204' => 'RP24-119I6.5',
'ENSMUSG00000100538' => 'RP24-119I6.2',
'ENSMUSG00000100720' => 'AC098736.2',
'ENSMUSG00000101117' => 'RP24-119I6.4',
'ENSMUSG00000101306' => 'RP24-284D7.1',
'ENSMUSG00000101644' => 'RP23-122B3.1',
'ENSMUSG00000101738' => 'RP24-108N24.1',
'ENSDARG00000012667' => 'tfap2b',
'ENSDARG00000023272' => 'tfap2d',
'ENSDARG00000080287' => '5S_rRNA',
'ENSDARG00000097548' => 'tfap2b'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 24 => 'Brain',
(int) 42 => 'Breast',
(int) 53 => 'Colon',
(int) 58 => 'Heart',
(int) 69 => 'Kidney',
(int) 84 => 'Liver',
(int) 95 => 'Lung',
(int) 101 => 'Muscle',
(int) 111 => 'Ovary',
(int) 123 => 'Placenta',
(int) 127 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 40,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000344788' => array(
'start' => '50818723',
'end' => '50828679',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2B-002'
),
'ENST00000393655' => array(
'start' => '50818723',
'end' => '50847613',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2B-001'
),
'ENST00000489228' => array(
'start' => '50821785',
'end' => '50823865',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2B-003'
),
'ENST00000008391' => array(
'start' => '50713828',
'end' => '50772988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2D-001'
),
'ENST00000492804' => array(
'start' => '50718042',
'end' => '50751274',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2D-002'
),
'ENST00000498293' => array(
'start' => '50857255',
'end' => '50857662',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS17P5-001'
),
'ENST00000402760' => array(
'start' => '50897615',
'end' => '50898225',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-753D5.3-001'
),
'ENST00000415106' => array(
'start' => '50093711',
'end' => '50099282',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-397G17.1-001'
),
'ENST00000425761' => array(
'start' => '50912712',
'end' => '50913256',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FTH1P5-001'
),
'ENST00000431394' => array(
'start' => '50587607',
'end' => '50636865',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-28O17.1-002'
),
'ENST00000454135' => array(
'start' => '50598591',
'end' => '50637205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-28O17.1-001'
),
'ENST00000426547' => array(
'start' => '50514035',
'end' => '50521104',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-524K22.1-001'
),
'ENSMUST00000027059' => array(
'start' => '19208914',
'end' => '19238576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-001'
),
'ENSMUST00000064976' => array(
'start' => '19212054',
'end' => '19234624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-003'
),
'ENSMUST00000186972' => array(
'start' => '19213879',
'end' => '19219253',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tfap2b-005'
),
'ENSMUST00000187754' => array(
'start' => '19208960',
'end' => '19238083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-002'
),
'ENSMUST00000191068' => array(
'start' => '19212306',
'end' => '19214442',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tfap2b-004'
),
'ENSMUST00000037294' => array(
'start' => '19103022',
'end' => '19166346',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2d-001'
),
'ENSMUST00000149505' => array(
'start' => '19107181',
'end' => '19148367',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tfap2d-002'
),
'ENSMUST00000073196' => array(
'start' => '19153310',
'end' => '19153966',
'transcript_biotype' => 'pseudogene',
'transcript_name' => 'Gm10075-201'
),
'ENSMUST00000122719' => array(
'start' => '19513855',
'end' => '19513919',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24633-201'
),
'ENSMUST00000158175' => array(
'start' => '18969762',
'end' => '18969833',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24075-201'
),
'ENSMUST00000159108' => array(
'start' => '19063300',
'end' => '19104840',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15825-001'
),
'ENSMUST00000185704' => array(
'start' => '19062857',
'end' => '19063135',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-122B3.2-001'
),
'ENSMUST00000188428' => array(
'start' => '19330939',
'end' => '19333184',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-119I6.5-001'
),
'ENSMUST00000189218' => array(
'start' => '19242725',
'end' => '19243769',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-119I6.2-001'
),
'ENSMUST00000162030' => array(
'start' => '19153422',
'end' => '19153966',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC098736.2-001'
),
'ENSMUST00000190883' => array(
'start' => '19320226',
'end' => '19320697',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-119I6.4-001'
),
'ENSMUST00000189030' => array(
'start' => '18708428',
'end' => '18709336',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-284D7.1-001'
),
'ENSMUST00000185386' => array(
'start' => '19037266',
'end' => '19037377',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-122B3.1-001'
),
'ENSMUST00000187966' => array(
'start' => '18307824',
'end' => '18313906',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-108N24.1-001'
),
'ENSDART00000013003' => array(
'start' => '48367978',
'end' => '48384457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-201'
),
'ENSDART00000024898' => array(
'start' => '48367978',
'end' => '48386117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-202'
),
'ENSDART00000060539' => array(
'start' => '48367978',
'end' => '48386071',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-203'
),
'ENSDART00000132105' => array(
'start' => '48367977',
'end' => '48386887',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-001'
),
'ENSDART00000135380' => array(
'start' => '48380540',
'end' => '48386108',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-002'
),
'ENSDART00000138860' => array(
'start' => '48382217',
'end' => '48384457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-003'
),
'ENSDART00000031167' => array(
'start' => '48397098',
'end' => '48411961',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2d-001'
),
'ENSDART00000117338' => array(
'start' => '48439044',
'end' => '48439166',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.30-201'
),
'ENSDART00000154114' => array(
'start' => '48347859',
'end' => '48383937',
'transcript_biotype' => 'antisense',
'transcript_name' => 'tfap2b-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MC_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MC_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MC_0001' => array(
'genes_in_region' => array(
'ENSG00000008196' => array(
[maximum depth reached]
),
'ENSG00000008197' => array(
[maximum depth reached]
),
'ENSG00000060303' => array(
[maximum depth reached]
),
'ENSG00000216913' => array(
[maximum depth reached]
),
'ENSG00000226733' => array(
[maximum depth reached]
),
'ENSG00000230204' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Ovary',
(int) 2 => 'Adipose',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Ovary',
(int) 14 => 'Breast',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Bladder',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Testis'
)
),
'CIL_0007MC_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000025927' => array(
[maximum depth reached]
),
'ENSMUSG00000042596' => array(
[maximum depth reached]
),
'ENSMUSG00000060128' => array(
[maximum depth reached]
),
'ENSMUSG00000089787' => array(
[maximum depth reached]
),
'ENSMUSG00000099433' => array(
[maximum depth reached]
),
'ENSMUSG00000100204' => array(
[maximum depth reached]
),
'ENSMUSG00000100538' => array(
[maximum depth reached]
),
'ENSMUSG00000100720' => array(
[maximum depth reached]
),
'ENSMUSG00000101738' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Testis',
(int) 9 => 'Adrenal',
(int) 10 => 'Brain',
(int) 11 => 'Breast',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Breast',
(int) 17 => 'Kidney',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adipose',
(int) 32 => 'Adrenal',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Ovary',
(int) 38 => 'Adipose',
(int) 39 => 'Brain',
(int) 40 => 'Liver',
(int) 41 => 'Brain',
(int) 42 => 'Adipose',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Lung',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Testis'
)
),
'CIL_0007MC_0007' => array(
'genes_in_region' => array(
'ENSDARG00000012667' => array(
[maximum depth reached]
),
'ENSDARG00000023272' => array(
[maximum depth reached]
),
'ENSDARG00000097548' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Kidney',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Brain',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000008196' => 'transcription factor AP-2 beta (activating enhancer binding protein 2 beta)',
'ENSG00000008197' => 'transcription factor AP-2 delta (activating enhancer binding protein 2 delta)',
'ENSG00000060303' => 'ribosomal protein S17 pseudogene 5',
'ENSG00000216913' => null,
'ENSG00000226733' => null,
'ENSG00000230204' => 'ferritin, heavy polypeptide 1 pseudogene 5',
'ENSG00000230472' => null,
'ENSG00000233470' => null,
'ENSMUSG00000025927' => 'transcription factor AP-2 beta',
'ENSMUSG00000042596' => 'transcription factor AP-2, delta',
'ENSMUSG00000060128' => 'predicted gene 10075',
'ENSMUSG00000084668' => 'predicted gene, 24633',
'ENSMUSG00000088800' => 'predicted gene, 24075',
'ENSMUSG00000089787' => 'predicted gene 15825',
'ENSMUSG00000099433' => 'predicted gene 28344',
'ENSMUSG00000100204' => 'predicted gene 4849',
'ENSMUSG00000100538' => 'predicted gene 28340',
'ENSMUSG00000100720' => null,
'ENSMUSG00000101117' => 'predicted gene 28341',
'ENSMUSG00000101306' => 'predicted gene 5252',
'ENSMUSG00000101644' => 'predicted gene 28343',
'ENSMUSG00000101738' => 'predicted gene 29006',
'ENSDARG00000012667' => 'transcription factor AP-2 beta',
'ENSDARG00000023272' => 'transcription factor AP-2 delta (activating enhancer binding protein 2 delta)',
'ENSDARG00000080287' => '5S ribosomal RNA',
'ENSDARG00000097548' => null
)
$gene_name_arr = array(
'ENSG00000008196' => 'TFAP2B',
'ENSG00000008197' => 'TFAP2D',
'ENSG00000060303' => 'RPS17P5',
'ENSG00000216913' => 'RP4-753D5.3',
'ENSG00000226733' => 'RP11-397G17.1',
'ENSG00000230204' => 'FTH1P5',
'ENSG00000230472' => 'RP1-28O17.1',
'ENSG00000233470' => 'RP11-524K22.1',
'ENSMUSG00000025927' => 'Tfap2b',
'ENSMUSG00000042596' => 'Tfap2d',
'ENSMUSG00000060128' => 'Gm10075',
'ENSMUSG00000084668' => 'Gm24633',
'ENSMUSG00000088800' => 'Gm24075',
'ENSMUSG00000089787' => 'Gm15825',
'ENSMUSG00000099433' => 'RP23-122B3.2',
'ENSMUSG00000100204' => 'RP24-119I6.5',
'ENSMUSG00000100538' => 'RP24-119I6.2',
'ENSMUSG00000100720' => 'AC098736.2',
'ENSMUSG00000101117' => 'RP24-119I6.4',
'ENSMUSG00000101306' => 'RP24-284D7.1',
'ENSMUSG00000101644' => 'RP23-122B3.1',
'ENSMUSG00000101738' => 'RP24-108N24.1',
'ENSDARG00000012667' => 'tfap2b',
'ENSDARG00000023272' => 'tfap2d',
'ENSDARG00000080287' => '5S_rRNA',
'ENSDARG00000097548' => 'tfap2b'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0001',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '50093187',
'seq_end' => '51124665',
'region_length' => '1031478',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0002',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51124673',
'seq_end' => '51126034',
'region_length' => '1361',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0003',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51126035',
'seq_end' => '51126105',
'region_length' => '70',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0004',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51126106',
'seq_end' => '51127540',
'region_length' => '1434',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0005',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51233000',
'seq_end' => '51284634',
'region_length' => '51634',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0006',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '18307438',
'seq_end' => '19700223',
'region_length' => '1392785',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0007',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '48330176',
'seq_end' => '48617223',
'region_length' => '287047',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0008',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA706',
'seq_start' => '32653',
'seq_end' => '33365',
'region_length' => '712',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 24 => 'Brain',
(int) 42 => 'Breast',
(int) 53 => 'Colon',
(int) 58 => 'Heart',
(int) 69 => 'Kidney',
(int) 84 => 'Liver',
(int) 95 => 'Lung',
(int) 101 => 'Muscle',
(int) 111 => 'Ovary',
(int) 123 => 'Placenta',
(int) 127 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 40
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000344788' => array(
'start' => '50818723',
'end' => '50828679',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2B-002'
),
'ENST00000393655' => array(
'start' => '50818723',
'end' => '50847613',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2B-001'
),
'ENST00000489228' => array(
'start' => '50821785',
'end' => '50823865',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2B-003'
),
'ENST00000008391' => array(
'start' => '50713828',
'end' => '50772988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2D-001'
),
'ENST00000492804' => array(
'start' => '50718042',
'end' => '50751274',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2D-002'
),
'ENST00000498293' => array(
'start' => '50857255',
'end' => '50857662',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS17P5-001'
),
'ENST00000402760' => array(
'start' => '50897615',
'end' => '50898225',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-753D5.3-001'
),
'ENST00000415106' => array(
'start' => '50093711',
'end' => '50099282',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-397G17.1-001'
),
'ENST00000425761' => array(
'start' => '50912712',
'end' => '50913256',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FTH1P5-001'
),
'ENST00000431394' => array(
'start' => '50587607',
'end' => '50636865',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-28O17.1-002'
),
'ENST00000454135' => array(
'start' => '50598591',
'end' => '50637205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-28O17.1-001'
),
'ENST00000426547' => array(
'start' => '50514035',
'end' => '50521104',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-524K22.1-001'
),
'ENSMUST00000027059' => array(
'start' => '19208914',
'end' => '19238576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-001'
),
'ENSMUST00000064976' => array(
'start' => '19212054',
'end' => '19234624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-003'
),
'ENSMUST00000186972' => array(
'start' => '19213879',
'end' => '19219253',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tfap2b-005'
),
'ENSMUST00000187754' => array(
'start' => '19208960',
'end' => '19238083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2b-002'
),
'ENSMUST00000191068' => array(
'start' => '19212306',
'end' => '19214442',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tfap2b-004'
),
'ENSMUST00000037294' => array(
'start' => '19103022',
'end' => '19166346',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2d-001'
),
'ENSMUST00000149505' => array(
'start' => '19107181',
'end' => '19148367',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tfap2d-002'
),
'ENSMUST00000073196' => array(
'start' => '19153310',
'end' => '19153966',
'transcript_biotype' => 'pseudogene',
'transcript_name' => 'Gm10075-201'
),
'ENSMUST00000122719' => array(
'start' => '19513855',
'end' => '19513919',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24633-201'
),
'ENSMUST00000158175' => array(
'start' => '18969762',
'end' => '18969833',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24075-201'
),
'ENSMUST00000159108' => array(
'start' => '19063300',
'end' => '19104840',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15825-001'
),
'ENSMUST00000185704' => array(
'start' => '19062857',
'end' => '19063135',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-122B3.2-001'
),
'ENSMUST00000188428' => array(
'start' => '19330939',
'end' => '19333184',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-119I6.5-001'
),
'ENSMUST00000189218' => array(
'start' => '19242725',
'end' => '19243769',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-119I6.2-001'
),
'ENSMUST00000162030' => array(
'start' => '19153422',
'end' => '19153966',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC098736.2-001'
),
'ENSMUST00000190883' => array(
'start' => '19320226',
'end' => '19320697',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-119I6.4-001'
),
'ENSMUST00000189030' => array(
'start' => '18708428',
'end' => '18709336',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-284D7.1-001'
),
'ENSMUST00000185386' => array(
'start' => '19037266',
'end' => '19037377',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-122B3.1-001'
),
'ENSMUST00000187966' => array(
'start' => '18307824',
'end' => '18313906',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-108N24.1-001'
),
'ENSDART00000013003' => array(
'start' => '48367978',
'end' => '48384457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-201'
),
'ENSDART00000024898' => array(
'start' => '48367978',
'end' => '48386117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-202'
),
'ENSDART00000060539' => array(
'start' => '48367978',
'end' => '48386071',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-203'
),
'ENSDART00000132105' => array(
'start' => '48367977',
'end' => '48386887',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-001'
),
'ENSDART00000135380' => array(
'start' => '48380540',
'end' => '48386108',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-002'
),
'ENSDART00000138860' => array(
'start' => '48382217',
'end' => '48384457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2b-003'
),
'ENSDART00000031167' => array(
'start' => '48397098',
'end' => '48411961',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2d-001'
),
'ENSDART00000117338' => array(
'start' => '48439044',
'end' => '48439166',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.30-201'
),
'ENSDART00000154114' => array(
'start' => '48347859',
'end' => '48383937',
'transcript_biotype' => 'antisense',
'transcript_name' => 'tfap2b-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MC_0001' => array(
'genes_in_region' => array(
'ENSG00000008196' => array(
[maximum depth reached]
),
'ENSG00000008197' => array(
[maximum depth reached]
),
'ENSG00000060303' => array(
[maximum depth reached]
),
'ENSG00000216913' => array(
[maximum depth reached]
),
'ENSG00000226733' => array(
[maximum depth reached]
),
'ENSG00000230204' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Ovary',
(int) 2 => 'Adipose',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Ovary',
(int) 14 => 'Breast',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Bladder',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Testis'
)
),
'CIL_0007MC_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000025927' => array(
[maximum depth reached]
),
'ENSMUSG00000042596' => array(
[maximum depth reached]
),
'ENSMUSG00000060128' => array(
[maximum depth reached]
),
'ENSMUSG00000089787' => array(
[maximum depth reached]
),
'ENSMUSG00000099433' => array(
[maximum depth reached]
),
'ENSMUSG00000100204' => array(
[maximum depth reached]
),
'ENSMUSG00000100538' => array(
[maximum depth reached]
),
'ENSMUSG00000100720' => array(
[maximum depth reached]
),
'ENSMUSG00000101738' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Testis',
(int) 9 => 'Adrenal',
(int) 10 => 'Brain',
(int) 11 => 'Breast',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Breast',
(int) 17 => 'Kidney',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adipose',
(int) 32 => 'Adrenal',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Ovary',
(int) 38 => 'Adipose',
(int) 39 => 'Brain',
(int) 40 => 'Liver',
(int) 41 => 'Brain',
(int) 42 => 'Adipose',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Lung',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Testis'
)
),
'CIL_0007MC_0007' => array(
'genes_in_region' => array(
'ENSDARG00000012667' => array(
[maximum depth reached]
),
'ENSDARG00000023272' => array(
[maximum depth reached]
),
'ENSDARG00000097548' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Muscle',
(int) 3 => 'Brain',
(int) 4 => 'Kidney',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Brain',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MC_0005',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '51233000',
'seq_end' => '51284634',
'region_length' => '51634',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2B'
)
)
$gene_el = array(
'ENST00000425761' => array(
'Adipose' => array(
'average_FPKM' => '0.152',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.133',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.269',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.130',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.263',
'stddev_FPKM' => '0.17'
),
'Liver' => array(
'average_FPKM' => '0.206',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.320',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.203',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000230204'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.152',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.133',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.269',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.130',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.263',
'stddev_FPKM' => '0.17'
),
'Liver' => array(
'average_FPKM' => '0.206',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.320',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.203',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000425761'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(TFAP2B)