C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005MX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000008196-ENSG00000170927 CGP 9606 6:50818723-52087625
GeneTranscriptPositionBiotype
ENSG00000008196 (TFAP2B)
transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 		ENST00000344788 (TFAP2B-002) 50818723-50828679 protein_coding
ENST00000393655 (TFAP2B-001) 50818723-50847613 protein_coding
ENST00000489228 (TFAP2B-003) 50821785-50823865 processed_transcript
ENSG00000060303 (RPS17P5)
ribosomal protein S17 pseudogene 5 		ENST00000498293 (RPS17P5-001) 50857255-50857662 processed_pseudogene
ENSG00000170927 (PKHD1)
polycystic kidney and hepatic disease 1 (autosomal recessive) 		ENST00000340994 (PKHD1-002) 51720849-52087610 protein_coding
ENST00000371117 (PKHD1-001) 51615300-52087625 protein_coding
ENSG00000214641 (RP11-793K1.1)
 ENST00000398713 (RP11-793K1.1-001) 51537155-51537543 processed_pseudogene
ENSG00000216913 (RP4-753D5.3)
 ENST00000402760 (RP4-753D5.3-001) 50897615-50898225 processed_pseudogene
ENSG00000228689 (RP3-335N17.2)
 ENST00000454361 (RP3-335N17.2-001) 51605265-51622884 antisense
ENST00000587000 (RP3-335N17.2-003) 51621821-51622541 antisense
ENST00000589278 (RP3-335N17.2-002) 51599723-51622541 antisense
ENSG00000230204 (FTH1P5)
ferritin, heavy polypeptide 1 pseudogene 5 		ENST00000425761 (FTH1P5-001) 50912712-50913256 processed_pseudogene
ENSG00000232702 (RP3-437C15.1)
 ENST00000416077 (RP3-437C15.1-001) 51410081-51410537 processed_pseudogene
ENSG00000240641 (RN7SL580P)
RNA, 7SL, cytoplasmic 580, pseudogene 		ENST00000492489 (RN7SL580P-201) 51975673-51975959 misc_RNA
CIL_0005MX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025927-ENSMUSG00000043760 CGP 10090 1:19208914-20618064
GeneTranscriptPositionBiotype
ENSMUSG00000025927 (Tfap2b)
transcription factor AP-2 beta 		ENSMUST00000027059 (Tfap2b-001) 19208914-19238576 protein_coding
ENSMUST00000064976 (Tfap2b-003) 19212054-19234624 protein_coding
ENSMUST00000186972 (Tfap2b-005) 19213879-19219253 retained_intron
ENSMUST00000187754 (Tfap2b-002) 19208960-19238083 protein_coding
ENSMUST00000191068 (Tfap2b-004) 19212306-19214442 retained_intron
ENSMUSG00000043760 (Pkhd1)
polycystic kidney and hepatic disease 1 		ENSMUST00000088448 (Pkhd1-001) 20057779-20618064 protein_coding
ENSMUST00000128051 (Pkhd1-004) 20606297-20618040 processed_transcript
ENSMUST00000132647 (Pkhd1-002) 20374722-20409448 processed_transcript
ENSMUST00000147480 (Pkhd1-003) 20592953-20618064 retained_intron
ENSMUSG00000089914 (4930486I03Rik)
RIKEN cDNA 4930486I03 gene 		ENSMUST00000161509 (4930486I03Rik-001) 20356452-20392300 antisense
ENSMUSG00000090142 (Gm15795)
predicted gene 15795 		ENSMUST00000160969 (Gm15795-001) 20444258-20444810 processed_pseudogene
ENSMUSG00000100204 (RP24-119I6.5)
predicted gene 4849 		ENSMUST00000188428 (RP24-119I6.5-001) 19330939-19333184 processed_pseudogene
ENSMUSG00000100538 (RP24-119I6.2)
predicted gene 28340 		ENSMUST00000189218 (RP24-119I6.2-001) 19242725-19243769 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MX_0001ENSG00000008196ENST00000344788ENST00000393655ENST00000489228ENSG00000060303ENST00000498293ENSG00000170927ENST00000340994ENST00000371117ENSG00000214641ENST00000398713ENSG00000216913ENST00000402760ENSG00000228689ENST00000454361ENST00000587000ENST00000589278ENSG00000230204ENST00000425761ENSG00000232702ENST00000416077ENSG00000240641ENST00000492489CIL_0005MX_0002ENSMUSG00000025927ENSMUST00000027059ENSMUST00000064976ENSMUST00000186972ENSMUST00000187754ENSMUST00000191068ENSMUSG00000043760ENSMUST00000088448ENSMUST00000128051ENSMUST00000132647ENSMUST00000147480ENSMUSG00000089914ENSMUST00000161509ENSMUSG00000090142ENSMUST00000160969ENSMUSG00000100204ENSMUST00000188428ENSMUSG00000100538ENSMUST00000189218
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MX_0001ENSG00000008196ENST00000344788ENST00000393655ENSG00000060303ENST00000498293ENSG00000170927ENST00000340994ENST00000371117ENSG00000214641ENST00000398713ENSG00000216913ENST00000402760ENSG00000228689ENST00000454361ENST00000587000ENST00000589278ENSG00000230204ENST00000425761ENSG00000232702ENST00000416077ENSG00000240641ENST00000492489CIL_0005MX_0002ENSMUSG00000025927ENSMUST00000027059ENSMUST00000064976ENSMUST00000186972ENSMUST00000187754ENSMUST00000191068ENSMUSG00000043760ENSMUST00000088448ENSMUST00000132647ENSMUSG00000089914ENSMUST00000161509ENSMUSG00000090142ENSMUST00000160969ENSMUSG00000100204ENSMUST00000188428ENSMUSG00000100538ENSMUST00000189218
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008196 ENST00000344788 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A
ENST00000393655 0.006±0.00 N/A N/A 0.005±0.00 0.426±0.00 N/A 0.004±0.00 2.578±0.00 0.025±0.02 N/A 0.011±0.00 0.019±0.01 0.237±0.00 0.758±0.00
ENST00000489228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000060303 ENST00000498293 0.136±0.00 0.148±0.00 N/A 0.225±0.00 0.262±0.00 0.240±0.00 0.033±0.00 0.037±0.00 N/A 0.035±0.00 0.158±0.00 0.078±0.00 N/A 0.195±0.00
ENSG00000170927 ENST00000340994 N/A N/A 7.969±0.00 N/A 0.004±0.00 0.018±0.01 N/A 0.606±0.00 0.030±0.00 N/A 0.127±0.00 0.018±0.01 N/A N/A
ENST00000371117 0.005±0.00 N/A 9.442±0.00 0.004±0.00 0.009±0.00 N/A 0.011±0.00 2.593±0.00 0.169±0.00 0.035±0.00 N/A 0.011±0.00 0.023±0.01 0.278±0.05
ENSG00000214641 ENST00000398713 0.036±0.00 N/A N/A 0.039±0.00 N/A N/A N/A 0.038±0.00 N/A 0.071±0.00 N/A N/A N/A N/A
ENSG00000216913 ENST00000402760 N/A N/A 0.535±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228689 ENST00000454361 N/A N/A N/A N/A N/A N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A
ENST00000587000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.405±0.43
ENST00000589278 0.052±0.00 0.097±0.00 N/A 0.208±0.00 0.041±0.00 0.029±0.00 0.104±0.00 N/A 0.045±0.00 0.102±0.00 0.184±0.00 N/A N/A N/A
ENSG00000230204 ENST00000425761 0.152±0.00 0.133±0.00 N/A 0.218±0.00 0.269±0.00 0.124±0.00 0.130±0.03 0.263±0.17 0.206±0.00 0.320±0.00 0.203±0.00 N/A N/A 0.047±0.00
ENSG00000232702 ENST00000416077 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A 0.186±0.00 0.102±0.01 0.108±0.04
ENSG00000240641 ENST00000492489 0.056±0.00 0.360±0.00 N/A 0.127±0.00 0.124±0.00 N/A 0.260±0.20 N/A N/A N/A N/A 0.288±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025927 ENSMUST00000027059 N/A 0.404±0.21 0.007±0.00 9.080±7.44 0.758±0.28 N/A N/A 2.364±0.43 0.009±0.01 N/A 0.015±0.01 0.016±0.01 N/A 0.054±0.03
ENSMUST00000064976 N/A 2.153±0.98 N/A 0.289±0.00 1.156±0.00 N/A 0.023±0.01 1.653±0.00 N/A N/A N/A N/A N/A 0.126±0.02
ENSMUST00000186972 N/A 1.149±0.19 N/A N/A 3.334±0.59 N/A N/A 4.033±0.21 N/A N/A N/A 0.107±0.00 N/A 0.406±0.06
ENSMUST00000187754 0.010±0.00 0.541±0.10 0.051±0.01 8.058±0.32 1.347±0.24 N/A N/A 2.843±0.56 0.007±0.00 N/A 0.035±0.01 0.029±0.00 0.033±0.01 0.099±0.01
ENSMUST00000191068 0.172±0.00 1.543±0.76 N/A N/A 3.143±0.31 0.068±0.00 0.076±0.00 5.995±1.78 N/A N/A N/A 0.105±0.00 N/A N/A
ENSMUSG00000043760 ENSMUST00000088448 0.119±0.16 0.012±0.00 1.255±0.10 0.004±0.00 0.010±0.01 0.188±0.04 N/A 7.043±3.64 0.265±0.20 0.033±0.01 0.004±0.00 0.079±0.02 0.016±0.00 N/A
ENSMUST00000128051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.879±0.00 N/A N/A
ENSMUST00000147480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089914 ENSMUST00000161509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.371±0.05 N/A 16.241±6.09
ENSMUSG00000090142 ENSMUST00000160969 N/A N/A 0.216±0.01 0.013±0.01 N/A N/A N/A 0.349±0.16 0.140±0.18 N/A N/A 0.147±0.00 0.271±0.17 N/A
ENSMUSG00000100204 ENSMUST00000188428 N/A N/A 0.012±0.01 0.002±0.00 N/A N/A 0.014±0.00 0.018±0.00 0.012±0.00 0.054±0.00 0.023±0.00 0.019±0.01 0.025±0.01 0.044±0.02
ENSMUSG00000100538 ENSMUST00000189218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.319±0.57

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