C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic component 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000523609 AGO2-003 ENSG00000123908 9606 - 8:140531421-140635546 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000523609
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000523609 2.228±0.00 0.512±0.00 1.259±0.00 1.217±0.00 0.769±0.00 1.329±0.00 0.524±0.05 0.709±0.00 6.584±0.00 8.058±0.00 2.746±2.05 1.219±0.14 1.048±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XO CIL_0002XO_0001 CGP 8:140511298-140635619
CIL_0002XD CIL_0002XD_0001 CGP 8:140531165-141002216

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044113 Ago2-001 protein_coding Mus_musculus 0 3591
ENSMUST00000117257 Gm6088-001 processed_pseudogene Mus_musculus 0 2375
ENSMUST00000097888 Ago1-001 protein_coding Mus_musculus 0 1349
ENSMUST00000127800 Ago1-002 nonsense_mediated_decay Mus_musculus 0 1258
ENSDART00000083777 protein_coding Danio_rerio 0 1205
ENSMUST00000176315 Ago1-005 protein_coding Mus_musculus 0 1033
ENSDART00000091813 ago3b-001 protein_coding Danio_rerio 0 1033
ENSMUST00000069097 Ago3-001 protein_coding Mus_musculus 0 878

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