C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RPL36A-HNRNPH2 readthrough
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409170 RPL36A-HNRNPH2-002 ENSG00000257529 9606 + X:101391012-101412165 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverMuscleOvaryENST00000409170
Transcript ID Colon Heart Liver Muscle Ovary
ENST00000409170 20.349±0.00 10.259±0.00 14.503±0.00 21.809±0.00 40.063±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DV CIL_0000DV_0001 CGP X:101349447-101396154

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 444
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 431
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 424
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 416
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 399
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000059297 Hnrnph2-002 protein_coding Mus_musculus 0 348
ENSMUST00000050331 Hnrnph2-004 protein_coding Mus_musculus 0 348
ENSMUST00000113202 Hnrnph2-005 protein_coding Mus_musculus 0 348
ENSMUST00000113203 Hnrnph2-003 protein_coding Mus_musculus 0 348
ENSMUST00000074950 Hnrnph2-001 protein_coding Mus_musculus 0 348
ENSMUST00000174479 Dtnb-005 protein_coding Mus_musculus 0 344
ENSMUST00000170943 Gm8775-201 protein_coding Mus_musculus 0 278
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 0 230
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 1.4013e-45 187
ENSMUST00000069304 Hnrnph1-201 protein_coding Mus_musculus 9.80909e-45 183
ENSMUST00000134230 Hnrnph1-009 processed_transcript Mus_musculus 9.80909e-45 183
ENSMUST00000133435 Hnrnph1-013 processed_transcript Mus_musculus 9.80909e-45 183
ENSMUST00000129631 Hnrnph1-012 processed_transcript Mus_musculus 9.80909e-45 183
ENSMUST00000128220 Hnrnph1-015 processed_transcript Mus_musculus 9.80909e-45 183
ENSMUST00000077817 Hnrnph1-006 protein_coding Mus_musculus 9.80909e-45 183
ENSMUST00000123371 Hnrnph1-008 processed_transcript Mus_musculus 9.80909e-45 183
ENSMUST00000150153 Hnrnph1-011 processed_transcript Mus_musculus 9.80909e-45 183
ENSMUST00000127964 Hnrnph1-010 processed_transcript Mus_musculus 9.80909e-45 183
ENSMUST00000126737 Hnrnph1-007 processed_transcript Mus_musculus 9.80909e-45 183
ENSMUST00000109142 Hnrnph1-005 protein_coding Mus_musculus 9.80909e-45 183

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