C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071095 Setd3-001 ENSMUSG00000056770 10090 - 12:108106431-108179314 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071095
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071095 15.095±5.94 4.269±2.00 30.605±0.40 15.427±2.52 5.585±2.70 8.207±4.33 10.692±3.72 15.993±5.93 15.356±8.12 8.276±3.89 40.232±0.84 8.705±8.53 15.555±5.56 17.960±6.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0002 UCNEbase 12:107085268-108123079
CIL_0005H1 CIL_0005H1_0002 CGP 12:107910403-108179314
CIL_0009CK CIL_0009CK_0002 VISTA 12:107949271-108552884
CIL_0003HD CIL_0003HD_0002 CGP 12:108106431-108203359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0003713 ISS transcription coactivator activity
GO:0006351 IEA transcription, DNA-templated
GO:0010452 ISS histone H3-K36 methylation
GO:0018023 ISS peptidyl-lysine trimethylation
GO:0018026 ISS peptidyl-lysine monomethylation
GO:0018027 ISS peptidyl-lysine dimethylation
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046975 ISS histone methyltransferase activity (H3-K36 specific)
GO:0051149 IMP positive regulation of muscle cell differentiation
GO:0051568 IDA histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329331 SETD3-003 protein_coding Homo_sapiens 0 1238
ENST00000331768 SETD3-001 protein_coding Homo_sapiens 0 2429
ENST00000357563 SETD3-004 nonsense_mediated_decay Homo_sapiens 0 688
ENST00000436070 SETD3-002 protein_coding Homo_sapiens 0 1240
ENST00000446066 SETD3-005 nonsense_mediated_decay Homo_sapiens 0 1074
ENST00000453764 SETD3-008 nonsense_mediated_decay Homo_sapiens 0 881
ENST00000453938 SETD3-007 processed_transcript Homo_sapiens 0 418
ENST00000489770 SETD3-006 retained_intron Homo_sapiens 0 497

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