C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003HD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183576-ENSG00000090061 CGP 9606 14:99397746-99535044
GeneTranscriptPositionBiotype
ENSG00000183576 (SETD3)
SET domain containing 3 		ENST00000329331 (SETD3-003) 99409804-99480788 protein_coding
ENST00000331768 (SETD3-001) 99397746-99480879 protein_coding
ENST00000357563 (SETD3-004) 99411578-99480837 nonsense_mediated_decay
ENST00000436070 (SETD3-002) 99411279-99480790 protein_coding
ENST00000446066 (SETD3-005) 99398469-99480801 nonsense_mediated_decay
ENST00000453764 (SETD3-008) 99405315-99480860 nonsense_mediated_decay
ENST00000453938 (SETD3-007) 99458299-99478769 processed_transcript
ENST00000489770 (SETD3-006) 99398732-99413250 retained_intron
ENSG00000205476 (CCDC85C)
coiled-coil domain containing 85C 		ENST00000380243 (CCDC85C-001) 99500180-99604026 protein_coding
ENST00000554877 (CCDC85C-004) 99515300-99576592 protein_coding
ENST00000554996 (CCDC85C-003) 99515200-99580126 protein_coding
ENST00000555822 (CCDC85C-007) 99515087-99522945 protein_coding
ENST00000556348 (CCDC85C-005) 99516265-99572975 protein_coding
ENST00000557576 (CCDC85C-006) 99514961-99536088 protein_coding
ENST00000557769 (CCDC85C-002) 99512032-99522563 protein_coding
ENSG00000258749 (RP11-688G15.3)
 ENST00000557733 (RP11-688G15.3-001) 99512501-99513576 antisense
ENSG00000272439 (U6)
U6 spliceosomal RNA 		ENST00000607774 (U6.1-238) 99444306-99444412 snRNA
CIL_0003HD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056770-ENSMUSG00000021258 CGP 10090 12:108106431-108203359
GeneTranscriptPositionBiotype
ENSMUSG00000021258 (Ccnk)
cyclin K 		ENSMUST00000101055 (Ccnk-201) 108179738-108203359 protein_coding
ENSMUSG00000056770 (Setd3)
SET domain containing 3 		ENSMUST00000071095 (Setd3-001) 108106431-108179314 protein_coding
ENSMUST00000109879 (Setd3-007) 108116775-108179216 protein_coding
ENSMUST00000125210 (Setd3-006) 108112130-108115083 processed_transcript
ENSMUST00000125916 (Setd3-005) 108157984-108179213 protein_coding
ENSMUST00000132682 (Setd3-002) 108107038-108179227 nonsense_mediated_decay
ENSMUST00000147466 (Setd3-003) 108117034-108179263 nonsense_mediated_decay
ENSMUST00000148119 (Setd3-004) 108106666-108114947 retained_intron
ENSMUST00000169951 (Setd3-008) 108118297-108163009 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003HD_0001ENSG00000183576ENST00000329331ENST00000331768ENST00000357563ENST00000436070ENST00000446066ENST00000453764ENST00000453938ENST00000489770ENSG00000205476ENST00000380243ENST00000554877ENST00000554996ENST00000555822ENST00000556348ENST00000557576ENST00000557769ENSG00000258749ENST00000557733ENSG00000272439ENST00000607774CIL_0003HD_0002ENSMUSG00000021258ENSMUST00000101055ENSMUSG00000056770ENSMUST00000071095ENSMUST00000109879ENSMUST00000125210ENSMUST00000125916ENSMUST00000132682ENSMUST00000147466ENSMUST00000148119ENSMUST00000169951
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003HD_0001ENSG00000183576ENST00000329331ENST00000331768ENST00000446066ENSG00000205476ENST00000380243ENST00000557769ENSG00000258749ENST00000557733ENSG00000272439ENST00000607774CIL_0003HD_0002ENSMUSG00000021258ENSMUST00000101055ENSMUSG00000056770ENSMUST00000071095ENSMUST00000109879ENSMUST00000132682ENSMUST00000147466ENSMUST00000148119
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183576 ENST00000329331 N/A N/A N/A 26.666±0.00 8.240±0.00 10.123±0.00 9.936±0.00 14.218±0.00 20.359±0.00 16.424±0.00 13.872±0.00 15.596±0.00 N/A N/A
ENST00000331768 17.977±0.00 13.093±0.00 1.764±0.00 24.655±0.00 10.335±7.40 11.677±8.64 18.011±11.77 33.219±0.00 11.542±1.31 24.172±0.00 21.958±17.76 8.482±5.66 17.076±3.54 35.234±4.98
ENST00000357563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446066 4.110±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.387±0.00 N/A N/A 19.751±0.00
ENST00000453764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000205476 ENST00000380243 1.105±0.00 0.935±0.00 0.277±0.00 0.905±0.79 1.141±0.00 1.105±0.73 0.850±0.73 1.192±0.91 0.735±0.42 3.066±0.00 1.659±0.00 1.703±0.89 1.812±0.37 2.881±1.32
ENST00000554877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557769 N/A N/A 0.812±0.00 2.412±1.37 N/A 7.766±0.00 3.343±2.75 4.481±0.00 5.648±0.00 N/A 0.364±0.00 3.596±0.00 4.320±1.24 N/A
ENSG00000258749 ENST00000557733 N/A N/A N/A N/A N/A 19.756±0.00 16.936±0.00 N/A 16.176±0.00 N/A N/A 15.020±0.00 9.445±0.00 N/A
ENSG00000272439 ENST00000607774 N/A 0.210±0.00 N/A N/A 70.510±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.563±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021258 ENSMUST00000101055 1.664±0.44 1.002±0.50 5.386±0.00 7.502±4.19 1.202±0.46 1.977±0.88 2.281±0.94 1.832±0.58 3.312±2.34 1.973±0.60 27.705±2.11 1.101±0.49 4.427±1.07 60.546±4.64
ENSMUSG00000056770 ENSMUST00000071095 15.095±5.94 4.269±2.00 30.605±0.40 15.427±2.52 5.585±2.70 8.207±4.33 10.692±3.72 15.993±5.93 15.356±8.12 8.276±3.89 40.232±0.84 8.705±8.53 15.555±5.56 17.960±6.41
ENSMUST00000109879 3.740±0.00 2.334±0.31 N/A N/A 2.129±0.26 2.104±0.55 N/A N/A 2.365±0.28 2.533±0.06 N/A 2.209±0.44 N/A N/A
ENSMUST00000125210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.426±1.41 6.163±0.83 N/A
ENSMUST00000147466 N/A N/A N/A N/A 2.190±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148119 3.817±0.45 2.378±0.29 N/A 3.771±0.13 1.941±0.29 2.737±0.17 N/A N/A 2.303±0.49 2.997±0.72 N/A 2.704±1.49 2.167±0.02 2.355±0.00
ENSMUST00000169951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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