C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000329331 SETD3-003 ENSG00000183576 9606 - 14:99409804-99480788 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000329331
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000329331 26.666±0.00 8.240±0.00 10.123±0.00 9.936±0.00 14.218±0.00 20.359±0.00 16.424±0.00 13.872±0.00 15.596±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0001 UCNEbase 14:98137606-99417500
CIL_0005H1 CIL_0005H1_0001 CGP 14:99169287-99480879
CIL_0009CK CIL_0009CK_0001 VISTA 14:99273315-99877989
CIL_0003HD CIL_0003HD_0001 CGP 14:99397746-99535044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0010452 ISS histone H3-K36 methylation
GO:0018023 ISS peptidyl-lysine trimethylation
GO:0018026 ISS peptidyl-lysine monomethylation
GO:0018027 ISS peptidyl-lysine dimethylation
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046975 ISS histone methyltransferase activity (H3-K36 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071095 Setd3-001 protein_coding Mus_musculus 0 1238
ENSMUST00000109879 Setd3-007 protein_coding Mus_musculus 0 1236
ENSMUST00000190159 RP23-75G11.2-001 processed_pseudogene Mus_musculus 0 1068
ENSMUST00000120625 Gm14026-001 processed_pseudogene Mus_musculus 0 1031
ENSMUST00000118089 Gm8036-001 processed_pseudogene Mus_musculus 0 990
ENSMUST00000147466 Setd3-003 nonsense_mediated_decay Mus_musculus 0 688
ENSMUST00000125916 Setd3-005 protein_coding Mus_musculus 0 656
ENSMUST00000132682 Setd3-002 nonsense_mediated_decay Mus_musculus 0 451
ENSMUST00000169951 Setd3-008 processed_transcript Mus_musculus 3.9937e-43 180

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