C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 10093
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079363 Gm10093-201 ENSMUSG00000061062 10090 + 17:78491565-78493541 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079363
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079363 3.088±0.94 0.819±0.20 0.774±0.16 0.531±0.26 2.126±0.22 1.825±0.87 0.444±0.12 1.618±0.17 1.120±0.64 1.482±0.38 0.066±0.04 3.227±1.70 3.001±3.81 2.316±1.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373548 HDAC1-001 protein_coding Homo_sapiens 0 2004
ENST00000428704 HDAC1-010 protein_coding Homo_sapiens 0 516
ENST00000453661 HDAC1P2-001 transcribed_processed_pseudogene Homo_sapiens 0 717
ENST00000455482 HDAC1P1-001 processed_pseudogene Homo_sapiens 0 737
ENST00000463172 HDAC1-003 processed_transcript Homo_sapiens 0 747
ENST00000472928 HDAC1-005 processed_transcript Homo_sapiens 0 676
ENST00000476391 HDAC1-002 retained_intron Homo_sapiens 0 963
ENST00000481281 HDAC1-006 processed_transcript Homo_sapiens 0 741
ENST00000482310 HDAC1-007 processed_transcript Homo_sapiens 0 765
ENST00000490081 HDAC1-004 processed_transcript Homo_sapiens 0 859
ENST00000536916 RP11-172C16.4-001 processed_pseudogene Homo_sapiens 0 1245
ENST00000602936 HDAC1P2-002 processed_transcript Homo_sapiens 0 298

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