C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007GL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075525-ENSDARG00000077788 CGP 7955 17:25015379-25087635
GeneTranscriptPositionBiotype
ENSDARG00000075525 (cln8)
ceroid-lipofuscinosis, neuronal 8 		ENSDART00000100277 (cln8-201) 25015827-25020400 protein_coding
ENSDART00000148431 (cln8-001) 25015383-25020404 protein_coding
ENSDART00000149452 (cln8-002) 25015379-25016175 retained_intron
ENSDARG00000077788 (arhgef10)
Rho guanine nucleotide exchange factor (GEF) 10 		ENSDART00000110451 (arhgef10-201) 25041386-25087544 protein_coding
ENSDART00000148775 (arhgef10-001) 25025337-25087635 protein_coding
ENSDART00000149129 (arhgef10-002) 25058168-25068593 retained_intron
ENSDART00000150084 (arhgef10-003) 25025337-25041488 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0007GL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182372-ENSG00000104728 CGP 9606 8:1755778-1958641
GeneTranscriptPositionBiotype
ENSG00000104728 (ARHGEF10)
Rho guanine nucleotide exchange factor (GEF) 10 		ENST00000349830 (ARHGEF10-003) 1823976-1958633 protein_coding
ENST00000382795 (ARHGEF10-008) 1858755-1869280 processed_transcript
ENST00000398560 (ARHGEF10-201) 1858755-1904096 protein_coding
ENST00000398564 (ARHGEF10-202) 1826111-1958633 protein_coding
ENST00000518288 (ARHGEF10-001) 1824015-1958641 protein_coding
ENST00000519641 (ARHGEF10-010) 1923196-1923874 retained_intron
ENST00000520359 (ARHGEF10-002) 1823988-1958641 protein_coding
ENST00000520972 (ARHGEF10-006) 1859894-1904110 retained_intron
ENST00000521927 (ARHGEF10-013) 1943654-1957205 processed_transcript
ENST00000522435 (ARHGEF10-004) 1882656-1958639 protein_coding
ENST00000522969 (ARHGEF10-007) 1859915-1871131 retained_intron
ENST00000523596 (ARHGEF10-012) 1943594-1952774 processed_transcript
ENST00000523711 (ARHGEF10-005) 1876051-1927513 retained_intron
ENST00000523980 (ARHGEF10-011) 1943595-1945919 retained_intron
ENST00000524212 (ARHGEF10-009) 1904235-1923490 processed_transcript
ENSG00000182372 (CLN8)
ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) 		ENST00000331222 (CLN8-001) 1763762-1786572 protein_coding
ENST00000517514 (CLN8-006) 1755788-1759511 processed_transcript
ENST00000518780 (CLN8-007) 1755781-1759501 processed_transcript
ENST00000519254 (CLN8-005) 1772924-1780772 processed_transcript
ENST00000520991 (CLN8-004) 1763803-1771567 retained_intron
ENST00000523237 (CLN8-008) 1773584-1780766 processed_transcript
ENST00000524258 (CLN8-002) 1755778-1771294 processed_transcript
ENSG00000253982 (CTD-2336O2.1)
 ENST00000517959 (CTD-2336O2.1-002) 1762081-1764502 antisense
ENST00000518481 (CTD-2336O2.1-003) 1762625-1763297 antisense
ENST00000518822 (CTD-2336O2.1-001) 1761990-1764339 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007GL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026317-ENSMUSG00000071176 CGP 10090 8:14881335-15001085
GeneTranscriptPositionBiotype
ENSMUSG00000026317 (Cln8)
ceroid-lipofuscinosis, neuronal 8 		ENSMUST00000027554 (Cln8-001) 14888111-14901720 protein_coding
ENSMUST00000123990 (Cln8-002) 14888045-14895059 protein_coding
ENSMUST00000128839 (Cln8-004) 14889359-14894919 protein_coding
ENSMUST00000132001 (Cln8-005) 14881335-14894716 protein_coding
ENSMUST00000133578 (Cln8-003) 14889004-14894786 protein_coding
ENSMUSG00000071176 (Arhgef10)
Rho guanine nucleotide exchange factor (GEF) 10 		ENSMUST00000084207 (Arhgef10-001) 14911663-15001085 protein_coding
ENSMUST00000110800 (Arhgef10-002) 14911738-15001085 protein_coding
ENSMUST00000160619 (Arhgef10-004) 14911717-14928291 retained_intron
ENSMUST00000161162 (Arhgef10-003) 14911724-14961202 protein_coding
ENSMUST00000162444 (Arhgef10-006) 14990359-14991124 processed_transcript
ENSMUST00000162636 (Arhgef10-005) 14996136-15001074 processed_transcript
ENSMUST00000163062 (Arhgef10-007) 14945301-15001082 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GL_0001ENSDARG00000075525ENSDART00000100277ENSDART00000148431ENSDART00000149452ENSDARG00000077788ENSDART00000110451ENSDART00000148775ENSDART00000149129ENSDART00000150084CIL_0007GL_0002ENSG00000104728ENST00000349830ENST00000382795ENST00000398560ENST00000398564ENST00000518288ENST00000519641ENST00000520359ENST00000520972ENST00000521927ENST00000522435ENST00000522969ENST00000523596ENST00000523711ENST00000523980ENST00000524212ENSG00000182372ENST00000331222ENST00000517514ENST00000518780ENST00000519254ENST00000520991ENST00000523237ENST00000524258ENSG00000253982ENST00000517959ENST00000518481ENST00000518822CIL_0007GL_0003ENSMUSG00000026317ENSMUST00000027554ENSMUST00000123990ENSMUST00000128839ENSMUST00000132001ENSMUST00000133578ENSMUSG00000071176ENSMUST00000084207ENSMUST00000110800ENSMUST00000160619ENSMUST00000161162ENSMUST00000162444ENSMUST00000162636ENSMUST00000163062
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GL_0001ENSDARG00000075525ENSDART00000100277ENSDART00000148431ENSDARG00000077788ENSDART00000110451ENSDART00000148775ENSDART00000149129CIL_0007GL_0002ENSG00000104728ENST00000349830ENST00000398560ENST00000398564ENST00000519641ENST00000520359ENST00000520972ENST00000521927ENST00000522435ENST00000522969ENST00000523711ENSG00000182372ENST00000331222ENST00000519254ENST00000520991ENST00000523237ENSG00000253982ENST00000517959ENST00000518481ENST00000518822CIL_0007GL_0003ENSMUSG00000026317ENSMUST00000027554ENSMUST00000123990ENSMUSG00000071176ENSMUST00000084207ENSMUST00000110800ENSMUST00000161162ENSMUST00000162636ENSMUST00000163062
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000075525 ENSDART00000100277 N/A N/A N/A 1.007±0.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148431 N/A N/A N/A 0.387±0.02 N/A N/A 2.309±0.08 0.622±0.00 0.259±0.00 N/A 1.090±0.00 N/A N/A N/A
ENSDART00000149452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000077788 ENSDART00000110451 N/A N/A N/A 0.654±0.00 N/A N/A 1.764±0.00 0.394±0.00 N/A N/A 0.603±0.00 N/A N/A N/A
ENSDART00000148775 N/A N/A N/A 2.763±1.04 N/A N/A 4.772±3.87 1.528±0.00 0.232±0.00 N/A 0.731±0.00 N/A N/A N/A
ENSDART00000149129 N/A N/A N/A 0.708±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104728 ENST00000349830 1.388±0.00 2.091±0.00 0.691±0.00 3.581±0.00 2.054±0.00 2.016±1.62 1.612±1.37 1.825±0.00 1.037±0.89 1.373±0.63 0.217±0.00 2.174±1.87 1.078±0.41 6.586±0.30
ENST00000382795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.321±0.00 N/A N/A N/A
ENST00000398564 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.923±0.00 N/A 0.919±0.09 0.854±0.00 9.097±0.00
ENST00000518288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.732±0.00 N/A N/A N/A
ENST00000520359 2.505±0.00 N/A N/A N/A 1.160±0.01 N/A 1.408±0.85 N/A N/A 3.071±2.19 N/A 1.687±1.10 1.686±0.00 1.627±0.00
ENST00000520972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.417±0.00 N/A 8.854±0.00
ENST00000521927 N/A N/A N/A N/A N/A 2.891±0.00 N/A N/A N/A N/A 1.602±0.00 N/A N/A N/A
ENST00000522435 1.767±0.00 4.196±0.00 N/A N/A 2.283±0.00 2.292±0.00 N/A 0.897±0.76 0.152±0.00 2.022±0.00 0.329±0.22 1.825±0.26 0.749±0.00 2.123±0.00
ENST00000522969 N/A N/A N/A 0.541±0.00 N/A N/A N/A N/A N/A N/A 0.332±0.00 N/A N/A N/A
ENST00000523596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523711 N/A N/A 0.342±0.00 N/A N/A 0.326±0.00 N/A N/A N/A 1.109±0.00 N/A N/A N/A N/A
ENST00000523980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182372 ENST00000331222 1.349±0.00 2.672±0.00 0.764±0.00 3.288±2.98 1.729±1.30 0.869±0.17 0.925±0.57 1.954±1.69 1.429±0.58 2.821±0.00 0.750±0.00 1.572±0.12 2.487±0.51 2.278±0.22
ENST00000517514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519254 N/A N/A N/A N/A N/A N/A 1.099±0.00 N/A 3.146±0.00 N/A N/A N/A 6.355±1.55 N/A
ENST00000520991 N/A N/A 2.477±0.00 2.134±0.00 N/A 4.714±0.00 N/A 5.622±0.00 N/A 3.024±0.00 3.382±0.00 1.158±0.00 5.351±0.00 N/A
ENST00000523237 N/A N/A 2.295±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253982 ENST00000517959 N/A N/A N/A N/A N/A N/A N/A 1.669±0.00 0.793±0.00 N/A 0.329±0.00 N/A 0.206±0.00 N/A
ENST00000518481 9.335±0.00 6.713±0.00 2.120±0.00 9.675±4.69 6.132±5.57 2.826±2.23 4.780±3.53 9.156±0.06 4.810±2.17 3.767±3.25 4.984±1.24 7.645±4.78 7.126±2.10 8.874±2.11
ENST00000518822 N/A N/A N/A 0.498±0.00 N/A 0.463±0.00 N/A N/A N/A 0.536±0.14 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026317 ENSMUST00000027554 2.544±0.59 2.606±0.18 2.331±0.59 1.288±0.57 2.501±0.46 2.361±0.45 1.478±0.09 1.970±0.50 2.876±1.31 2.822±0.40 1.001±0.29 4.398±2.20 2.271±0.61 0.205±0.11
ENSMUST00000123990 N/A N/A N/A N/A 13.883±0.00 5.174±1.11 N/A N/A 5.494±0.00 N/A N/A 11.212±1.69 N/A 1.074±0.12
ENSMUST00000128839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000071176 ENSMUST00000084207 5.032±0.37 2.232±0.94 8.364±0.29 2.108±0.35 3.382±0.69 1.934±0.15 2.339±0.45 2.494±0.39 0.444±0.18 9.348±1.40 0.820±0.20 4.571±1.69 2.551±0.90 5.398±1.01
ENSMUST00000110800 8.271±2.37 2.974±0.98 4.606±0.17 3.248±1.56 6.124±1.86 2.931±0.97 2.465±0.86 1.038±0.32 0.515±0.20 6.986±1.25 0.476±0.25 5.932±2.26 4.931±2.17 2.626±1.15
ENSMUST00000160619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161162 N/A N/A N/A 7.538±0.00 N/A N/A N/A N/A N/A N/A N/A 8.440±0.00 6.362±0.52 4.626±0.00
ENSMUST00000162444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162636 N/A N/A 5.440±0.00 N/A N/A N/A 1.931±0.00 N/A 0.444±0.08 N/A 0.554±0.12 N/A N/A N/A
ENSMUST00000163062 N/A 3.268±1.70 N/A N/A 6.240±0.20 1.722±0.33 N/A N/A 0.269±0.09 4.098±0.40 N/A 4.195±1.75 N/A N/A

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