C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000046800 slc8a1a-201 ENSDARG00000013422 7955 - 11:31411404-31487268 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000046800
Transcript ID Heart Kidney Liver Muscle
ENSDART00000046800 96.091±0.00 1.144±0.00 0.253±0.00 0.363±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005432 IEA calcium:sodium antiporter activity
GO:0006816 IEA calcium ion transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0007154 IEA cell communication
GO:0008016 IMP regulation of heart contraction
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0035725 IMP sodium ion transmembrane transport
GO:0045214 IMP sarcomere organization
GO:0055085 IEA transmembrane transport
GO:0070588 IMP calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064594 Slc8a3-004 protein_coding Mus_musculus 0 344
ENSMUST00000085238 Slc8a3-001 protein_coding Mus_musculus 0 344
ENSMUST00000182208 Slc8a3-002 protein_coding Mus_musculus 0 344
ENSMUST00000182366 Slc8a3-005 protein_coding Mus_musculus 1e-39 167
ENST00000216568 SLC8A3-006 protein_coding Homo_sapiens 0 387
ENST00000356921 SLC8A3-001 protein_coding Homo_sapiens 0 387
ENST00000357887 SLC8A3-201 protein_coding Homo_sapiens 0 387
ENST00000381269 SLC8A3-003 protein_coding Homo_sapiens 0 387
ENST00000394330 SLC8A3-007 protein_coding Homo_sapiens 0 387
ENST00000494208 SLC8A3-002 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000528359 SLC8A3-005 protein_coding Homo_sapiens 0 387
ENST00000533541 SLC8A3-008 protein_coding Homo_sapiens 0 252
ENST00000534137 SLC8A3-004 protein_coding Homo_sapiens 0 387

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