C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) polymerase alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555626 PAPOLA-006 ENSG00000090060 9606 + 14:96502851-96564988 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HI CIL_0003HI_0001 CGP 14:96392111-96567111
CIL_0003HJ CIL_0003HJ_0001 CGP 14:96501433-96931722

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004652 IEA polynucleotide adenylyltransferase activity
GO:0005634 IDA:IEA nucleus
GO:0016779 IEA nucleotidyltransferase activity
GO:0031123 IEA RNA 3'-end processing
GO:0043631 IEA RNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021535 Papola-003 nonsense_mediated_decay Mus_musculus 0 3145
ENSMUST00000109901 Papola-001 protein_coding Mus_musculus 0 3145
ENSMUST00000168186 Papola-002 protein_coding Mus_musculus 0 3083
ENSMUST00000170002 Papola-010 protein_coding Mus_musculus 0 2909
ENSMUST00000163473 Papola-009 protein_coding Mus_musculus 0 2905
ENSMUST00000166329 Papola-008 nonsense_mediated_decay Mus_musculus 0 2433
ENSMUST00000169938 Papola-004 nonsense_mediated_decay Mus_musculus 0 2274
ENSMUST00000099400 Papolb-001 protein_coding Mus_musculus 0 2010
ENSMUST00000166498 Papola-005 retained_intron Mus_musculus 0 1781
ENSMUST00000118939 Gm14245-001 processed_pseudogene Mus_musculus 0 1705
ENSMUST00000166471 Papola-011 protein_coding Mus_musculus 0 1589
ENSMUST00000163805 Papola-006 retained_intron Mus_musculus 0 1367
ENSMUST00000164798 Papola-019 protein_coding Mus_musculus 0 1304
ENSMUST00000166735 Papola-007 protein_coding Mus_musculus 0 1282
ENSMUST00000165584 Papola-013 processed_transcript Mus_musculus 0 948
ENSMUST00000170540 Papola-015 protein_coding Mus_musculus 0 918
ENSMUST00000172040 Papola-012 processed_transcript Mus_musculus 0 878
ENSMUST00000169524 Papola-017 nonsense_mediated_decay Mus_musculus 0 693
ENSMUST00000170831 Papola-016 retained_intron Mus_musculus 0 411
ENSMUST00000172089 Papola-020 protein_coding Mus_musculus 0 388
ENSMUST00000164326 Papola-014 nonsense_mediated_decay Mus_musculus 0 291
ENSMUST00000170189 Papola-018 retained_intron Mus_musculus 1e-35 156

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