C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106241 Pabpc4-004 ENSMUSG00000011257 10090 + 4:123282832-123298832 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000106241
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000106241 5.961±0.82 14.895±0.29 1.401±0.00 8.192±1.11 9.140±2.68 2.593±0.61 2.410±0.80 2.892±0.00 10.631±2.33 6.879±0.32

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082327 pabpc4-001 protein_coding Danio_rerio 0 771
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 2002
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 2946
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 1977
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 1977
ENST00000414338 RP11-393N21.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000421687 PABPC4-017 protein_coding Homo_sapiens 0 1465
ENST00000437136 PABPC4-013 protein_coding Homo_sapiens 0 634
ENST00000451091 PABPC4-011 protein_coding Homo_sapiens 0 627
ENST00000461578 PABPC4-014 retained_intron Homo_sapiens 0 252
ENST00000468476 PABPC4-006 retained_intron Homo_sapiens 3e-38 165
ENST00000470443 PABPC4-007 nonsense_mediated_decay Homo_sapiens 0 942
ENST00000474378 PABPC4-008 protein_coding Homo_sapiens 0 627
ENST00000477556 PABPC4-009 retained_intron Homo_sapiens 3e-39 165
ENST00000482028 PABPC4-012 retained_intron Homo_sapiens 0 396
ENST00000483770 PABPC4-016 retained_intron Homo_sapiens 0 342
ENST00000484555 PABPC4-015 retained_intron Homo_sapiens 0 305
ENST00000492468 PABPC4-005 retained_intron Homo_sapiens 0 680
ENST00000492519 PABPC4-010 retained_intron Homo_sapiens 0 342
ENST00000513632 PABPC4-020 retained_intron Homo_sapiens 0 231
ENST00000525045 PABPC4-023 retained_intron Homo_sapiens 0 553
ENST00000525669 PABPC4-022 retained_intron Homo_sapiens 0 510
ENST00000525751 PABPC4-019 retained_intron Homo_sapiens 0 473
ENST00000527718 PABPC4-021 protein_coding Homo_sapiens 0 649
ENST00000529216 PABPC4-025 processed_transcript Homo_sapiens 0 209
ENST00000530186 PABPC4-024 protein_coding Homo_sapiens 0 298
ENST00000549280 RP11-813P10.2-001 processed_pseudogene Homo_sapiens 0 409
ENST00000555663 CTD-2643K12.1-001 processed_pseudogene Homo_sapiens 0 473

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