C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106243 Pabpc4-003 ENSMUSG00000011257 10090 + 4:123282825-123298925 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106243
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106243 3.232±0.23 12.561±0.00 3.218±0.76 4.222±0.05 10.132±5.88 9.260±0.00 23.141±8.47 4.861±0.85 13.632±11.04 5.251±0.35 27.858±9.27 15.717±0.88 5.162±0.20 0.449±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082327 pabpc4-001 protein_coding Danio_rerio 0 771
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 2857
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 2002
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 2049
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 1977
ENST00000414338 RP11-393N21.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000421687 PABPC4-017 protein_coding Homo_sapiens 0 1537
ENST00000437136 PABPC4-013 protein_coding Homo_sapiens 0 473
ENST00000451091 PABPC4-011 protein_coding Homo_sapiens 0 627
ENST00000468476 PABPC4-006 retained_intron Homo_sapiens 1e-32 147
ENST00000470443 PABPC4-007 nonsense_mediated_decay Homo_sapiens 0 942
ENST00000474378 PABPC4-008 protein_coding Homo_sapiens 0 627
ENST00000477556 PABPC4-009 retained_intron Homo_sapiens 3e-34 148
ENST00000482028 PABPC4-012 retained_intron Homo_sapiens 0 396
ENST00000483770 PABPC4-016 retained_intron Homo_sapiens 0 414
ENST00000492468 PABPC4-005 retained_intron Homo_sapiens 0 680
ENST00000492519 PABPC4-010 retained_intron Homo_sapiens 0 342
ENST00000513632 PABPC4-020 retained_intron Homo_sapiens 0 231
ENST00000525045 PABPC4-023 retained_intron Homo_sapiens 0 392
ENST00000525669 PABPC4-022 retained_intron Homo_sapiens 0 510
ENST00000525751 PABPC4-019 retained_intron Homo_sapiens 0 473
ENST00000527718 PABPC4-021 protein_coding Homo_sapiens 0 828
ENST00000529216 PABPC4-025 processed_transcript Homo_sapiens 0 209
ENST00000530186 PABPC4-024 protein_coding Homo_sapiens 0 298
ENST00000549280 RP11-813P10.2-001 processed_pseudogene Homo_sapiens 0 409
ENST00000555663 CTD-2643K12.1-001 processed_pseudogene Homo_sapiens 0 449

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