C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 34
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394001 KRT34-001 ENSG00000131737 9606 - 17:41377650-41382403 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverOvaryPlacentaENST00000394001
Transcript ID Liver Ovary Placenta
ENST00000394001 0.010±0.00 0.026±0.00 0.347±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_0008 CGP 17:41346092-41397592
CIL_00056U CIL_00056U_000E CGP 17:41363494-41397592
CIL_00056U CIL_00056U_000D CGP 17:41377650-41397592

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005615 IDA extracellular space
GO:0005882 IEA intermediate filament
GO:0008544 TAS epidermis development
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056362 Krt34-001 protein_coding Mus_musculus 0 1411
ENSMUST00000073890 Krt33b-001 protein_coding Mus_musculus 0 1279
ENSMUST00000018399 Krt33a-001 protein_coding Mus_musculus 0 1277
ENSMUST00000007318 Krt31-001 protein_coding Mus_musculus 0 1234
ENSMUST00000103127 Krt35-001 protein_coding Mus_musculus 0 771
ENSMUST00000107416 Krt36-001 protein_coding Mus_musculus 0 741
ENSMUST00000074253 Krt40-001 protein_coding Mus_musculus 0 427
ENSMUST00000138756 Krt33a-002 processed_transcript Mus_musculus 0 348
ENSMUST00000107443 Krt40-002 protein_coding Mus_musculus 0 305
ENSMUST00000173988 Krt35-002 retained_intron Mus_musculus 0 213

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