C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107515 Trpm1-009 ENSMUSG00000030523 10090 + 7:64185584-64218735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107515
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107515 0.083±0.04 0.081±0.02 0.038±0.00 0.089±0.08 0.138±0.06 0.093±0.05 0.043±0.02 0.078±0.03 0.112±0.12 0.095±0.03 0.051±0.00 0.114±0.10 0.108±0.04 0.174±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081G CIL_00081G_0002 VISTA 7:63656077-64260826

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005261 IDA cation channel activity
GO:0005262 ISS calcium channel activity
GO:0005886 IEA plasma membrane
GO:0007165 IGI signal transduction
GO:0007216 ISS G-protein coupled glutamate receptor signaling pathway
GO:0016021 IEA integral component of membrane
GO:0035841 IDA new growing cell tip
GO:0046548 IMP retinal rod cell development
GO:0060402 ISS calcium ion transport into cytosol
GO:0070588 ISS calcium ion transmembrane transport
GO:0071482 IMP cellular response to light stimulus
GO:0098655 IDA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256552 TRPM1-004 protein_coding Homo_sapiens 0 1362
ENST00000397795 TRPM1-001 protein_coding Homo_sapiens 0 1362
ENST00000542188 TRPM1-201 protein_coding Homo_sapiens 0 1362
ENST00000558070 TRPM1-009 retained_intron Homo_sapiens 0 361
ENST00000558445 TRPM1-008 protein_coding Homo_sapiens 0 1362
ENST00000558768 TRPM1-007 protein_coding Homo_sapiens 0 1277
ENST00000560658 TRPM1-005 nonsense_mediated_decay Homo_sapiens 0 798
ENST00000560801 TRPM1-006 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000611448 TRPM1-202 protein_coding Homo_sapiens 0 1367
ENST00000615583 TRPM1-203 protein_coding Homo_sapiens 0 1367
ENST00000617515 TRPM1-204 protein_coding Homo_sapiens 0 1367
ENST00000618210 TRPM1-205 protein_coding Homo_sapiens 0 1367
ENST00000621076 TRPM1-206 protein_coding Homo_sapiens 0 797

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