C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109331 Plxnb2-001 ENSMUSG00000036606 10090 - 15:89155549-89171120 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109331
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109331 22.917±14.47 39.897±1.90 26.691±5.30 40.761±29.78 21.482±10.09 95.582±3.89 13.203±5.36 47.960±10.29 22.158±14.34 51.060±1.83 1.170±0.58 57.655±17.42 23.578±11.20 17.083±5.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009A CIL_00009A_0002 CGP 15:89142486-89171120

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0001932 IMP regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005887 IDA integral component of plasma membrane
GO:0007405 IMP neuroblast proliferation
GO:0007420 IMP brain development
GO:0008360 IMP regulation of cell shape
GO:0017154 IMP semaphorin receptor activity
GO:0032319 IMP regulation of Rho GTPase activity
GO:0050772 IGI positive regulation of axonogenesis
GO:0071526 IMP semaphorin-plexin signaling pathway
GO:2001222 IMP regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296440 PLXNB1-001 protein_coding Homo_sapiens 0 254
ENST00000324093 PLXND1-001 protein_coding Homo_sapiens 8e-22 111
ENST00000358536 PLXNB1-003 protein_coding Homo_sapiens 0 254
ENST00000359337 PLXNB2-201 protein_coding Homo_sapiens 0 5452
ENST00000411680 PLXNB2-007 protein_coding Homo_sapiens 0 619
ENST00000425954 PLXNB2-003 protein_coding Homo_sapiens 0 446
ENST00000427829 PLXNB2-010 protein_coding Homo_sapiens 0 431
ENST00000432455 PLXNB2-012 protein_coding Homo_sapiens 0 1170
ENST00000449103 PLXNB2-001 protein_coding Homo_sapiens 0 5470
ENST00000456774 PLXNB1-005 protein_coding Homo_sapiens 0 254
ENST00000463165 PLXNB2-005 retained_intron Homo_sapiens 0 2519
ENST00000479701 PLXNB2-004 retained_intron Homo_sapiens 0 3083
ENST00000479818 PLXNB2-006 retained_intron Homo_sapiens 0 1101
ENST00000485535 PLXNB1-002 retained_intron Homo_sapiens 0 254
ENST00000492578 PLXNB2-011 retained_intron Homo_sapiens 0 429
ENST00000504524 PLXND1-002 retained_intron Homo_sapiens 0.000000000007 77
ENST00000506979 PLXND1-014 protein_coding Homo_sapiens 7e-23 111
ENST00000508630 PLXND1-016 retained_intron Homo_sapiens 3e-16 90
ENST00000512744 PLXND1-005 nonsense_mediated_decay Homo_sapiens 0.00000000000002 86
ENST00000610984 PLXNB2-202 protein_coding Homo_sapiens 0 3164
ENST00000614805 PLXNB2-203 protein_coding Homo_sapiens 0 1722

Loading