C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109879 Setd3-007 ENSMUSG00000056770 10090 - 12:108116775-108179216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverLungOvaryENSMUST00000109879
Transcript ID Adipose Adrenal Breast Colon Liver Lung Ovary
ENSMUST00000109879 3.740±0.00 2.334±0.31 2.129±0.26 2.104±0.55 2.365±0.28 2.533±0.06 2.209±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0002 UCNEbase 12:107085268-108123079
CIL_0005H1 CIL_0005H1_0002 CGP 12:107910403-108179314
CIL_0009CK CIL_0009CK_0002 VISTA 12:107949271-108552884
CIL_0003HD CIL_0003HD_0002 CGP 12:108106431-108203359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0003713 IEA transcription coactivator activity
GO:0010452 IEA histone H3-K36 methylation
GO:0018022 IEA peptidyl-lysine methylation
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046975 IDA histone methyltransferase activity (H3-K36 specific)
GO:0051149 IMP positive regulation of muscle cell differentiation
GO:0051568 IDA histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329331 SETD3-003 protein_coding Homo_sapiens 0 1236
ENST00000331768 SETD3-001 protein_coding Homo_sapiens 0 1240
ENST00000357563 SETD3-004 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000436070 SETD3-002 protein_coding Homo_sapiens 0 1256
ENST00000446066 SETD3-005 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000453764 SETD3-008 nonsense_mediated_decay Homo_sapiens 0 688
ENST00000453938 SETD3-007 processed_transcript Homo_sapiens 0 418

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