C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class B, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111390 Scarb1-002 ENSMUSG00000037936 10090 - 5:125277089-125341071 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111390 38.117±8.47 257.863±10.16 6.590±0.19 6.865±1.76 46.004±6.80 4.153±0.49 8.798±0.32 4.390±0.76 26.196±8.61 24.760±3.06 3.636±0.99 104.881±19.06 18.811±8.93 37.536±25.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000399 CIL_000399_0002 CGP 5:125017153-125341094
CIL_00006N CIL_00006N_0003 CGP 5:125277087-125390202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001935 IMP endothelial cell proliferation
GO:0005887 IDA integral component of plasma membrane
GO:0005901 IDA caveola
GO:0006707 IMP cholesterol catabolic process
GO:0007155 IEA cell adhesion
GO:0008035 IDA high-density lipoprotein particle binding
GO:0016021 IDA integral component of membrane
GO:0030301 IMP cholesterol transport
GO:0043534 IMP blood vessel endothelial cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261693 SCARB1-004 protein_coding Homo_sapiens 0 1031
ENST00000339570 SCARB1-001 protein_coding Homo_sapiens 0 1114
ENST00000415380 SCARB1-006 protein_coding Homo_sapiens 0 1031
ENST00000535005 SCARB1-003 processed_transcript Homo_sapiens 0 942
ENST00000538291 SCARB1-005 retained_intron Homo_sapiens 0 1031
ENST00000544327 SCARB1-009 protein_coding Homo_sapiens 0 941
ENST00000546215 SCARB1-007 protein_coding Homo_sapiens 0 990

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