C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class B, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339570 SCARB1-001 ENSG00000073060 9606 - 12:124776856-124863917 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENST00000339570
Transcript ID Brain Kidney
ENST00000339570 1.016±0.00 2.754±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000399 CIL_000399_0001 CGP 12:124324415-124882668
CIL_00006N CIL_00006N_0002 CGP 12:124776856-124917368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001530 IDA lipopolysaccharide binding
GO:0001786 ISS phosphatidylserine binding
GO:0001875 IDA lipopolysaccharide receptor activity
GO:0005215 TAS transporter activity
GO:0005515 IPI protein binding
GO:0005545 TAS 1-phosphatidylinositol binding
GO:0005765 IDA lysosomal membrane
GO:0005886 IDA plasma membrane
GO:0005901 TAS caveola
GO:0006898 IDA receptor-mediated endocytosis
GO:0007155 IEA cell adhesion
GO:0010595 TAS positive regulation of endothelial cell migration
GO:0010867 ISS positive regulation of triglyceride biosynthetic process
GO:0010886 IDA positive regulation of cholesterol storage
GO:0010899 ISS regulation of phosphatidylcholine catabolic process
GO:0015914 ISS phospholipid transport
GO:0015920 IDA lipopolysaccharide transport
GO:0016020 IEA membrane
GO:0016032 IEA viral process
GO:0030169 IDA low-density lipoprotein particle binding
GO:0030666 TAS endocytic vesicle membrane
GO:0031663 IDA lipopolysaccharide-mediated signaling pathway
GO:0032497 IDA detection of lipopolysaccharide
GO:0033344 ISS cholesterol efflux
GO:0034185 IPI apolipoprotein binding
GO:0034186 IPI apolipoprotein A-I binding
GO:0034375 ISS high-density lipoprotein particle remodeling
GO:0034383 ISS low-density lipoprotein particle clearance
GO:0034384 IDA high-density lipoprotein particle clearance
GO:0042060 TAS wound healing
GO:0042157 TAS lipoprotein metabolic process
GO:0042632 ISS cholesterol homeostasis
GO:0043654 IDA recognition of apoptotic cell
GO:0043691 IEP reverse cholesterol transport
GO:0044281 TAS small molecule metabolic process
GO:0044406 IMP adhesion of symbiont to host
GO:0050764 IC regulation of phagocytosis
GO:0051000 IDA positive regulation of nitric-oxide synthase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070328 ISS triglyceride homeostasis
GO:0070506 IDA high-density lipoprotein particle receptor activity
GO:0070508 ISS cholesterol import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111390 Scarb1-002 protein_coding Mus_musculus 0 1114
ENSMUST00000148373 Scarb1-003 retained_intron Mus_musculus 0 1031
ENSMUST00000086075 Scarb1-001 protein_coding Mus_musculus 0 1031
ENSMUST00000127148 Scarb1-005 protein_coding Mus_musculus 0 399

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