C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00006N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000042697-ENSDARG00000067755 CGP 7955 11:21525771-21580026
GeneTranscriptPositionBiotype
ENSDARG00000042697 (scarb1)
scavenger receptor class B, member 1 		ENSDART00000062645 (scarb1-201) 21526515-21567205 protein_coding
ENSDART00000129480 (scarb1-001) 21525771-21572564 protein_coding
ENSDART00000142399 (scarb1-002) 21526332-21552601 protein_coding
ENSDARG00000067755 (ubc)
ubiquitin C 		ENSDART00000099105 (ubc-001) 21577566-21580026 protein_coding
CIL_00006N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000073060-ENSG00000150991 CGP 9606 12:124776856-124917368
GeneTranscriptPositionBiotype
ENSG00000073060 (SCARB1)
scavenger receptor class B, member 1 		ENST00000261693 (SCARB1-004) 124777633-124863847 protein_coding
ENST00000339570 (SCARB1-001) 124776856-124863917 protein_coding
ENST00000415380 (SCARB1-006) 124777633-124863846 protein_coding
ENST00000535005 (SCARB1-003) 124782683-124880461 processed_transcript
ENST00000538291 (SCARB1-005) 124778278-124863863 retained_intron
ENST00000539320 (SCARB1-011) 124814973-124863896 processed_transcript
ENST00000541661 (SCARB1-013) 124814964-124882668 processed_transcript
ENST00000544327 (SCARB1-009) 124785820-124817707 protein_coding
ENST00000545305 (SCARB1-010) 124777873-124786493 processed_transcript
ENST00000545493 (SCARB1-012) 124814961-124863863 protein_coding
ENST00000546215 (SCARB1-007) 124778499-124863783 protein_coding
ENSG00000150991 (UBC)
ubiquitin C 		ENST00000339647 (UBC-001) 124911648-124915147 protein_coding
ENST00000535131 (UBC-015) 124913323-124914079 protein_coding
ENST00000535859 (UBC-013) 124913404-124914304 protein_coding
ENST00000536661 (UBC-010) 124913587-124915031 processed_transcript
ENST00000536769 (UBC-007) 124911604-124915348 protein_coding
ENST00000538617 (UBC-003) 124911646-124915303 protein_coding
ENST00000540351 (UBC-009) 124913290-124914141 protein_coding
ENST00000540700 (UBC-011) 124913370-124914591 protein_coding
ENST00000541272 (UBC-016) 124913035-124914074 protein_coding
ENST00000541645 (UBC-014) 124913306-124914119 protein_coding
ENST00000542416 (UBC-008) 124913587-124917368 protein_coding
ENST00000544481 (UBC-017) 124913350-124914065 processed_transcript
ENST00000546120 (UBC-201) 124911704-124914601 protein_coding
ENST00000546271 (UBC-012) 124913362-124914443 protein_coding
ENSG00000265345 (MIR5188)
microRNA 5188 		ENST00000583467 (MIR5188-201) 124915547-124915659 miRNA
CIL_00006N_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037936-ENSMUSG00000008348 CGP 10090 5:125277087-125390202
GeneTranscriptPositionBiotype
ENSMUSG00000008348 (Ubc)
ubiquitin C 		ENSMUST00000108707 (Ubc-003) 125387659-125389186 protein_coding
ENSMUST00000136312 (Ubc-001) 125385965-125390014 protein_coding
ENSMUST00000156249 (Ubc-002) 125385977-125390202 protein_coding
ENSMUSG00000037936 (Scarb1)
scavenger receptor class B, member 1 		ENSMUST00000086075 (Scarb1-001) 125277087-125341094 protein_coding
ENSMUST00000111390 (Scarb1-002) 125277089-125341071 protein_coding
ENSMUST00000123338 (Scarb1-009) 125297319-125304542 processed_transcript
ENSMUST00000124582 (Scarb1-010) 125277787-125284159 processed_transcript
ENSMUST00000127148 (Scarb1-005) 125277566-125294109 protein_coding
ENSMUST00000133624 (Scarb1-008) 125300360-125316632 processed_transcript
ENSMUST00000135736 (Scarb1-004) 125282950-125286677 retained_intron
ENSMUST00000137783 (Scarb1-006) 125304179-125340008 protein_coding
ENSMUST00000148373 (Scarb1-003) 125283355-125341019 retained_intron
ENSMUST00000156532 (Scarb1-007) 125304249-125326267 processed_transcript
ENSMUSG00000072612 (Gm10382)
predicted gene 10382 		ENSMUST00000100700 (Gm10382-201) 125389322-125390554 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006N_0001ENSDARG00000042697ENSDART00000062645ENSDART00000129480ENSDART00000142399ENSDARG00000067755ENSDART00000099105CIL_00006N_0002ENSG00000073060ENST00000261693ENST00000339570ENST00000415380ENST00000535005ENST00000538291ENST00000539320ENST00000541661ENST00000544327ENST00000545305ENST00000545493ENST00000546215ENSG00000150991ENST00000339647ENST00000535131ENST00000535859ENST00000536661ENST00000536769ENST00000538617ENST00000540351ENST00000540700ENST00000541272ENST00000541645ENST00000542416ENST00000544481ENST00000546120ENST00000546271ENSG00000265345ENST00000583467CIL_00006N_0003ENSMUSG00000008348ENSMUST00000108707ENSMUST00000136312ENSMUST00000156249ENSMUSG00000037936ENSMUST00000086075ENSMUST00000111390ENSMUST00000123338ENSMUST00000124582ENSMUST00000127148ENSMUST00000133624ENSMUST00000135736ENSMUST00000137783ENSMUST00000148373ENSMUST00000156532ENSMUSG00000072612ENSMUST00000100700
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006N_0001ENSDARG00000042697ENSDART00000062645ENSDART00000129480ENSDART00000142399ENSDARG00000067755ENSDART00000099105CIL_00006N_0002ENSG00000073060ENST00000261693ENST00000339570ENST00000415380ENST00000535005ENST00000538291ENST00000544327ENST00000545305ENST00000545493ENST00000546215ENSG00000150991ENST00000339647ENST00000536769ENST00000538617ENST00000541272ENST00000546120ENSG00000265345ENST00000583467CIL_00006N_0003ENSMUSG00000008348ENSMUST00000108707ENSMUST00000136312ENSMUST00000156249ENSMUSG00000037936ENSMUST00000086075ENSMUST00000111390ENSMUST00000123338ENSMUST00000148373ENSMUSG00000072612ENSMUST00000100700
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042697 ENSDART00000062645 N/A N/A N/A 1.084±0.78 N/A N/A 1.427±0.00 39.224±0.00 1.603±0.00 N/A 0.902±0.00 N/A N/A N/A
ENSDART00000129480 N/A N/A N/A 1.519±0.30 N/A N/A 3.551±1.72 8.592±5.08 0.609±0.00 N/A 0.830±0.00 N/A N/A N/A
ENSDART00000142399 N/A N/A N/A N/A N/A N/A 0.972±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000067755 ENSDART00000099105 N/A N/A N/A 158.381±161.83 N/A N/A 67.391±61.69 193.529±80.50 14.435±0.00 N/A 78.372±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000073060 ENST00000261693 49.681±0.00 11.885±0.00 N/A 4.679±0.00 29.577±0.00 7.799±6.45 3.693±0.00 8.931±5.47 96.184±0.00 7.621±0.00 1.392±0.00 51.088±52.18 187.351±138.18 6.303±1.24
ENST00000339570 N/A N/A N/A 1.016±0.00 N/A N/A N/A 2.754±0.00 N/A N/A N/A N/A N/A N/A
ENST00000415380 N/A N/A N/A 3.552±0.00 N/A N/A N/A N/A N/A N/A 2.473±1.30 N/A N/A N/A
ENST00000535005 N/A N/A N/A 1.304±0.00 N/A N/A 0.353±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000538291 N/A 1.082±0.00 0.135±0.00 0.708±0.47 2.063±1.29 0.195±0.00 0.979±0.00 0.473±0.00 0.832±0.00 1.000±0.00 0.296±0.10 2.382±1.48 N/A 2.542±0.55
ENST00000539320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.415±0.00 N/A 5.796±0.00
ENST00000545305 41.404±0.00 14.276±0.00 0.540±0.00 12.474±0.00 37.317±0.00 11.190±10.07 N/A 4.495±0.00 58.267±0.00 N/A N/A N/A N/A 16.478±0.00
ENST00000545493 N/A N/A N/A N/A N/A N/A N/A N/A 2.322±0.00 N/A N/A N/A N/A N/A
ENST00000546215 23.562±0.00 N/A 0.620±0.00 7.468±0.00 6.745±5.65 11.440±0.00 N/A 11.402±0.00 N/A 1.817±0.00 N/A 2.238±0.00 17.599±0.00 N/A
ENSG00000150991 ENST00000339647 98.746±0.00 79.910±0.00 N/A 113.515±0.00 92.181±6.79 111.088±0.00 72.296±0.00 77.357±11.07 64.832±29.95 133.483±24.64 136.901±0.00 49.130±19.24 N/A 148.514±45.83
ENST00000535131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536769 N/A 24.412±0.00 N/A N/A N/A N/A N/A N/A N/A 17.527±0.00 N/A N/A N/A N/A
ENST00000538617 172.446±0.00 164.947±0.00 36.555±0.00 158.878±66.51 129.904±45.13 132.715±84.40 90.402±38.27 90.619±40.62 72.843±3.06 218.487±136.06 181.432±63.45 103.730±74.78 281.890±66.29 198.304±49.00
ENST00000540351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541272 126.886±0.00 119.208±0.00 N/A 162.420±0.00 125.732±0.00 161.089±0.00 161.913±0.00 124.512±0.00 51.238±0.00 346.396±0.00 254.301±0.00 N/A N/A 198.206±0.00
ENST00000541645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546120 125.435±0.00 142.031±0.00 N/A 113.148±0.00 114.612±0.00 155.921±0.00 96.257±0.00 119.916±0.00 44.151±0.00 258.870±0.00 203.963±0.00 127.324±56.34 139.389±45.04 127.942±0.00
ENST00000546271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265345 ENST00000583467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.694±0.00 1.389±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008348 ENSMUST00000108707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.434±17.21
ENSMUST00000136312 162.720±31.89 118.166±17.17 113.659±8.84 143.674±126.94 82.700±21.38 154.576±18.71 95.671±11.02 184.313±10.54 121.208±61.77 110.915±12.30 111.384±37.13 144.000±51.53 72.327±28.76 75.856±38.18
ENSMUST00000156249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.622±0.00 N/A 4.596±0.00
ENSMUSG00000037936 ENSMUST00000086075 65.684±19.37 1048.744±57.86 31.488±0.57 3.700±0.04 74.840±8.82 20.530±2.38 10.345±4.35 10.477±2.82 53.431±13.74 61.359±10.91 6.303±0.99 346.004±70.03 52.519±33.37 18.016±9.23
ENSMUST00000111390 38.117±8.47 257.863±10.16 6.590±0.19 6.865±1.76 46.004±6.80 4.153±0.49 8.798±0.32 4.390±0.76 26.196±8.61 24.760±3.06 3.636±0.99 104.881±19.06 18.811±8.93 37.536±25.15
ENSMUST00000123338 N/A N/A N/A 6.055±0.00 N/A N/A N/A N/A N/A N/A N/A 159.218±0.00 65.128±50.10 9.473±0.00
ENSMUST00000124582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148373 N/A N/A N/A 4.822±0.00 N/A N/A N/A N/A N/A N/A N/A 73.969±14.35 N/A 7.609±0.00
ENSMUST00000156532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000072612 ENSMUST00000100700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.859±26.06

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