C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm specific antigen 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409001 SSFA2-004 ENSG00000138434 9606 + 2:181891985-181930738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409001
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409001 7.066±0.00 8.066±0.00 1.587±0.00 4.370±0.00 6.440±3.14 4.134±0.00 5.508±0.00 3.632±0.00 11.587±4.42 0.914±0.00 8.175±4.37 5.582±1.87 10.628±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080Y CIL_00080Y_0001 VISTA 2:181386314-181987082
CIL_0004BY CIL_0004BY_0002 CGP 2:181673088-181930738
CIL_0004BV CIL_0004BV_0002 CGP 2:181891833-182131398

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005102 IEA receptor binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111784 Ssfa2-004 protein_coding Mus_musculus 0 3668
ENSMUST00000111788 Ssfa2-003 protein_coding Mus_musculus 0 2719
ENSMUST00000111785 Ssfa2-001 protein_coding Mus_musculus 0 2719
ENSMUST00000133266 Ssfa2-002 processed_transcript Mus_musculus 0 2311
ENSMUST00000124938 Ssfa2-005 processed_transcript Mus_musculus 0 401

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