C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm specific antigen 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454579 SSFA2-005 ENSG00000138434 9606 + 2:181892196-181929784 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyMuscleOvaryTestisENST00000454579
Transcript ID Brain Breast Heart Kidney Muscle Ovary Testis
ENST00000454579 5.152±0.00 2.799±0.00 1.011±0.00 5.820±0.00 1.765±0.00 19.934±0.00 6.813±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080Y CIL_00080Y_0001 VISTA 2:181386314-181987082
CIL_0004BY CIL_0004BY_0002 CGP 2:181673088-181930738
CIL_0004BV CIL_0004BV_0002 CGP 2:181891833-182131398

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111784 Ssfa2-004 protein_coding Mus_musculus 0 2652
ENSMUST00000133266 Ssfa2-002 processed_transcript Mus_musculus 0 2261
ENSMUST00000111788 Ssfa2-003 protein_coding Mus_musculus 0 2261
ENSMUST00000111785 Ssfa2-001 protein_coding Mus_musculus 0 2261
ENSMUST00000124938 Ssfa2-005 processed_transcript Mus_musculus 2e-39 169

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