C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, L type, alpha 1D subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112250 Cacna1d-202 ENSMUSG00000015968 10090 - 14:30039949-30491156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartMuscleOvaryPlacentaTestisENSMUST00000112250
Transcript ID Adipose Bladder Brain Colon Heart Muscle Ovary Placenta Testis
ENSMUST00000112250 0.632±0.02 0.471±0.09 4.471±0.00 2.564±0.38 0.237±0.00 0.054±0.03 2.476±1.09 1.271±0.00 2.019±0.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IEA voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IC integral component of plasma membrane
GO:0005891 TAS voltage-gated calcium channel complex
GO:0006816 IEA calcium ion transport
GO:0007188 IMP adenylate cyclase-modulating G-protein coupled receptor signaling pathway
GO:0007605 IMP sensory perception of sound
GO:0008331 IDA high voltage-gated calcium channel activity
GO:0030018 IDA Z disc
GO:0030506 IPI ankyrin binding
GO:0046872 IEA metal ion binding
GO:0051393 IEA alpha-actinin binding
GO:0051928 IEA positive regulation of calcium ion transport
GO:0060372 IMP regulation of atrial cardiac muscle cell membrane repolarization
GO:0070509 IBA calcium ion import
GO:0070588 IMP calcium ion transmembrane transport
GO:0086046 IMP membrane depolarization during SA node cell action potential
GO:0086052 IEA membrane repolarization during SA node cell action potential
GO:0086059 IMP voltage-gated calcium channel activity involved SA node cell action potential
GO:0086091 IMP regulation of heart rate by cardiac conduction
GO:1901016 IMP regulation of potassium ion transmembrane transporter activity
GO:1901379 IMP regulation of potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089956 cacna1da-201 protein_coding Danio_rerio 0 1810
ENSDART00000058276 cacna1da-001 protein_coding Danio_rerio 0 1810
ENSDART00000100118 cacna1da-202 protein_coding Danio_rerio 0 911
ENSDART00000105895 cacna1sa-001 protein_coding Danio_rerio 0 457
ENSDART00000011078 CACNA1F (1 of 2)-201 protein_coding Danio_rerio 0 455
ENSDART00000041564 cacna1f-201 protein_coding Danio_rerio 0 422
ENSDART00000134151 cacna1f-001 protein_coding Danio_rerio 0 388
ENST00000288139 CACNA1D-001 protein_coding Homo_sapiens 0 3482
ENST00000315251 CHDH-001 protein_coding Homo_sapiens 1.99965e-42 180
ENST00000327702 CACNA1C-023 protein_coding Homo_sapiens 0 1107
ENST00000335762 CACNA1C-015 protein_coding Homo_sapiens 0 603
ENST00000344100 CACNA1C-021 protein_coding Homo_sapiens 0 1107
ENST00000347598 CACNA1C-017 protein_coding Homo_sapiens 0 1107
ENST00000350061 CACNA1D-003 protein_coding Homo_sapiens 0 5214
ENST00000362061 CACNA1S-001 protein_coding Homo_sapiens 0 688
ENST00000367338 CACNA1S-002 protein_coding Homo_sapiens 0 1273
ENST00000399591 CACNA1C-008 protein_coding Homo_sapiens 0 1107
ENST00000399595 CACNA1C-002 protein_coding Homo_sapiens 0 1107
ENST00000399597 CACNA1C-005 protein_coding Homo_sapiens 0 1107
ENST00000399601 CACNA1C-020 protein_coding Homo_sapiens 0 1107
ENST00000399603 CACNA1C-011 protein_coding Homo_sapiens 0 1068
ENST00000399606 CACNA1C-019 protein_coding Homo_sapiens 0 1107
ENST00000399617 CACNA1C-013 protein_coding Homo_sapiens 0 1068
ENST00000399621 CACNA1C-006 protein_coding Homo_sapiens 0 1107
ENST00000399629 CACNA1C-022 protein_coding Homo_sapiens 0 1107
ENST00000399634 CACNA1C-012 protein_coding Homo_sapiens 0 1068
ENST00000399637 CACNA1C-007 protein_coding Homo_sapiens 0 1107
ENST00000399638 CACNA1C-004 protein_coding Homo_sapiens 0 1107
ENST00000399641 CACNA1C-010 protein_coding Homo_sapiens 0 1068
ENST00000399644 CACNA1C-003 protein_coding Homo_sapiens 0 1107
ENST00000399649 CACNA1C-024 protein_coding Homo_sapiens 0 1107
ENST00000399655 CACNA1C-001 protein_coding Homo_sapiens 0 1107
ENST00000402845 CACNA1C-032 protein_coding Homo_sapiens 0 1107
ENST00000406454 CACNA1C-031 protein_coding Homo_sapiens 0 1068
ENST00000422281 CACNA1D-002 protein_coding Homo_sapiens 0 7361
ENST00000464429 CACNA1D-006 retained_intron Homo_sapiens 0 435
ENST00000480911 CACNA1C-018 protein_coding Homo_sapiens 0 1107
ENST00000481085 CACNA1D-007 protein_coding Homo_sapiens 0 651
ENST00000481478 CACNA1D-004 protein_coding Homo_sapiens 0 3411
ENST00000496818 CACNA1C-026 protein_coding Homo_sapiens 0 337
ENST00000613940 CACNA1C-201 protein_coding Homo_sapiens 0 944
ENST00000615303 CACNA1C-202 protein_coding Homo_sapiens 0 983
ENST00000615400 CACNA1C-203 protein_coding Homo_sapiens 0 983
ENST00000620878 CACNA1C-204 protein_coding Homo_sapiens 0 944
ENST00000621625 CACNA1C-205 protein_coding Homo_sapiens 0 983

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