C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, L type, alpha 1S subunit, a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000105895 cacna1sa-001 ENSDARG00000029457 7955 - 22:892640-948674 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000105895
Transcript ID Brain Heart Kidney Muscle
ENSDART00000105895 0.045±0.02 0.595±0.20 0.240±0.10 0.491±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005245 IEA voltage-gated calcium channel activity
GO:0005262 IEA calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006816 IEA calcium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0055085 IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112064 Cacna1s-201 protein_coding Mus_musculus 0 1256
ENSMUST00000112068 Cacna1s-001 protein_coding Mus_musculus 0 1256
ENSMUST00000112249 Cacna1d-201 protein_coding Mus_musculus 0 457
ENSMUST00000112250 Cacna1d-202 protein_coding Mus_musculus 0 457
ENSMUST00000115725 Cacna1f-002 protein_coding Mus_musculus 0 329
ENSMUST00000115726 Cacna1f-001 protein_coding Mus_musculus 0 329
ENSMUST00000141634 Cacna1f-004 retained_intron Mus_musculus 0 329
ENSMUST00000155090 Cacna1f-003 nonsense_mediated_decay Mus_musculus 0 329
ENSMUST00000160641 Cacna1s-002 protein_coding Mus_musculus 0 1256
ENSMUST00000161865 Cacna1s-003 protein_coding Mus_musculus 0 1086
ENST00000216297 SUPT16H-001 protein_coding Homo_sapiens 0.00009 55
ENST00000288139 CACNA1D-001 protein_coding Homo_sapiens 0 525
ENST00000327702 CACNA1C-023 protein_coding Homo_sapiens 0 383
ENST00000335762 CACNA1C-015 protein_coding Homo_sapiens 0 383
ENST00000344100 CACNA1C-021 protein_coding Homo_sapiens 0 383
ENST00000347598 CACNA1C-017 protein_coding Homo_sapiens 0 396
ENST00000350061 CACNA1D-003 protein_coding Homo_sapiens 0 525
ENST00000362061 CACNA1S-001 protein_coding Homo_sapiens 0 1330
ENST00000367338 CACNA1S-002 protein_coding Homo_sapiens 0 1332
ENST00000399591 CACNA1C-008 protein_coding Homo_sapiens 0 383
ENST00000399595 CACNA1C-002 protein_coding Homo_sapiens 0 383
ENST00000399597 CACNA1C-005 protein_coding Homo_sapiens 0 396
ENST00000399601 CACNA1C-020 protein_coding Homo_sapiens 0 383
ENST00000399603 CACNA1C-011 protein_coding Homo_sapiens 0 396
ENST00000399606 CACNA1C-019 protein_coding Homo_sapiens 0 383
ENST00000399617 CACNA1C-013 protein_coding Homo_sapiens 0 396
ENST00000399621 CACNA1C-006 protein_coding Homo_sapiens 0 383
ENST00000399629 CACNA1C-022 protein_coding Homo_sapiens 0 396
ENST00000399634 CACNA1C-012 protein_coding Homo_sapiens 0 383
ENST00000399637 CACNA1C-007 protein_coding Homo_sapiens 0 383
ENST00000399638 CACNA1C-004 protein_coding Homo_sapiens 0 396
ENST00000399641 CACNA1C-010 protein_coding Homo_sapiens 0 383
ENST00000399644 CACNA1C-003 protein_coding Homo_sapiens 0 396
ENST00000399649 CACNA1C-024 protein_coding Homo_sapiens 0 383
ENST00000399655 CACNA1C-001 protein_coding Homo_sapiens 0 383
ENST00000402845 CACNA1C-032 protein_coding Homo_sapiens 0 396
ENST00000406454 CACNA1C-031 protein_coding Homo_sapiens 0 396
ENST00000422281 CACNA1D-002 protein_coding Homo_sapiens 0 525
ENST00000480911 CACNA1C-018 protein_coding Homo_sapiens 0 383
ENST00000481478 CACNA1D-004 protein_coding Homo_sapiens 0 523
ENST00000496818 CACNA1C-026 protein_coding Homo_sapiens 0 331
ENST00000537175 RP11-473N11.2-001 processed_pseudogene Homo_sapiens 0.00006 55
ENST00000552829 SUPT16H-008 retained_intron Homo_sapiens 0.00001 55
ENST00000557394 SUPT16H-004 retained_intron Homo_sapiens 0.00004 55
ENST00000613940 CACNA1C-201 protein_coding Homo_sapiens 0 396
ENST00000615303 CACNA1C-202 protein_coding Homo_sapiens 0 396
ENST00000615400 CACNA1C-203 protein_coding Homo_sapiens 0 396
ENST00000620878 CACNA1C-204 protein_coding Homo_sapiens 0 383
ENST00000621625 CACNA1C-205 protein_coding Homo_sapiens 0 383

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