C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein S18C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112898 Mrps18c-004 ENSMUSG00000016833 10090 + 5:100798737-100804461 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLiverLungOvaryTestisENSMUST00000112898
Transcript ID Adipose Adrenal Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000112898 4.188±0.00 7.157±3.38 8.934±2.88 7.031±3.03 15.776±2.61 22.621±2.70 5.521±1.54 3.025±1.38 8.027±3.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000820 CIL_000820_0002 VISTA 5:100731954-101333223
CIL_0006JA CIL_0006JA_0002 CGP 5:100762145-100804471
CIL_0006J9 CIL_0006J9_0002 CGP 5:100798627-100820965

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295491 MRPS18C-001 protein_coding Homo_sapiens 0 198
ENST00000321945 FAM175A-001 protein_coding Homo_sapiens 5e-27 128
ENST00000475656 FAM175A-002 nonsense_mediated_decay Homo_sapiens 3e-27 128
ENST00000505525 MRPS18C-007 retained_intron Homo_sapiens 4e-28 128
ENST00000505719 MRPS18C-005 protein_coding Homo_sapiens 0 296
ENST00000507019 MRPS18C-003 protein_coding Homo_sapiens 0 198
ENST00000507349 MRPS18C-006 protein_coding Homo_sapiens 0 195
ENST00000509970 MRPS18C-010 protein_coding Homo_sapiens 0 198
ENST00000514581 MRPS18C-004 retained_intron Homo_sapiens 0 198
ENST00000603391 RP11-62H7.3-001 processed_pseudogene Homo_sapiens 9.99967e-42 172

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