C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligand of numb-protein X 1, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306888 LNX1-002 ENSG00000072201 9606 - 4:53459301-53558217 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryENST00000306888
Transcript ID Brain Muscle Ovary
ENST00000306888 10.660±3.63 1.576±0.00 5.467±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272
CIL_0007V9 CIL_0007V9_0001 VISTA 4:52895307-53499113
CIL_0001CL CIL_0001CL_0001 CGP 4:53377643-54295272
CIL_0001CM CIL_0001CM_0001 CGP 4:53459301-54064690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117525 Lnx1-004 protein_coding Mus_musculus 0 2060
ENSMUST00000039744 Lnx1-001 protein_coding Mus_musculus 0 2015
ENSMUST00000117388 Lnx1-006 protein_coding Mus_musculus 0 1901
ENSMUST00000087161 Lnx1-201 protein_coding Mus_musculus 0 1855
ENSMUST00000113531 Lnx1-202 protein_coding Mus_musculus 0 1855
ENSMUST00000127396 Lnx1-002 nonsense_mediated_decay Mus_musculus 0 1855
ENSMUST00000121690 Lnx1-003 protein_coding Mus_musculus 0 1480
ENSMUST00000154928 Lnx1-007 nonsense_mediated_decay Mus_musculus 0 955
ENSMUST00000153543 Lnx1-008 protein_coding Mus_musculus 0 562
ENSMUST00000140084 Lnx1-009 protein_coding Mus_musculus 0 409
ENSMUST00000080164 Fip1l1-001 protein_coding Mus_musculus 0 377
ENSMUST00000121950 Fip1l1-008 protein_coding Mus_musculus 0 355
ENSMUST00000120618 Fip1l1-005 protein_coding Mus_musculus 0 355
ENSMUST00000113536 Fip1l1-003 protein_coding Mus_musculus 0 291
ENSMUST00000113535 Fip1l1-004 protein_coding Mus_musculus 0 287
ENSMUST00000122245 Fip1l1-006 protein_coding Mus_musculus 0 272
ENSMUST00000125129 Fip1l1-011 retained_intron Mus_musculus 2e-24 119

Loading