C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: factor interacting with PAPOLA and CPSF1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000337488 FIP1L1-001 ENSG00000145216 9606 + 4:53377645-53459668 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000337488
Transcript ID Testis
ENST00000337488 20.547±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RT CIL_0008RT_0001 VISTA 4:52776116-53378130
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272
CIL_0007V9 CIL_0007V9_0001 VISTA 4:52895307-53499113
CIL_0001CL CIL_0001CL_0001 CGP 4:53377643-54295272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005847 IEA mRNA cleavage and polyadenylation specificity factor complex
GO:0006397 IEA mRNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121950 Fip1l1-008 protein_coding Mus_musculus 0 2575
ENSMUST00000120618 Fip1l1-005 protein_coding Mus_musculus 0 2174
ENSMUST00000113534 Fip1l1-007 protein_coding Mus_musculus 0 2097
ENSMUST00000113536 Fip1l1-003 protein_coding Mus_musculus 0 1280
ENSMUST00000113535 Fip1l1-004 protein_coding Mus_musculus 0 1081
ENSMUST00000080164 Fip1l1-001 protein_coding Mus_musculus 0 1016
ENSMUST00000122245 Fip1l1-006 protein_coding Mus_musculus 0 941
ENSMUST00000139697 Fip1l1-009 retained_intron Mus_musculus 0 337
ENSMUST00000125129 Fip1l1-011 retained_intron Mus_musculus 0 255
ENSMUST00000135377 Fip1l1-010 retained_intron Mus_musculus 0 213

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