C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12643
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116078 Gm12643-001 ENSMUSG00000079962 10090 + 4:91037900-91038273 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverOvaryPlacentaENSMUST00000116078
Transcript ID Bladder Brain Breast Liver Ovary Placenta
ENSMUST00000116078 0.036±0.00 0.035±0.00 0.540±0.00 0.043±0.00 0.424±0.05 0.370±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VP CIL_0007VP_0002 VISTA 4:90727482-91328588

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000404787 RP1-140K8.2-001 processed_pseudogene Homo_sapiens 0 342
ENST00000427600 RP11-543B16.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000469891 CTD-2287O16.1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000476147 RP11-587D21.1-001 processed_pseudogene Homo_sapiens 0 425
ENST00000524864 RPS25-002 retained_intron Homo_sapiens 0 230
ENST00000527673 RPS25-001 protein_coding Homo_sapiens 0 407
ENST00000527791 RPS25-003 nonsense_mediated_decay Homo_sapiens 0 206
ENST00000527853 RPS25-008 retained_intron Homo_sapiens 0 324
ENST00000532567 RPS25-005 nonsense_mediated_decay Homo_sapiens 0 322

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