C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12626
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117339 Gm12626-001 ENSMUSG00000094278 10090 - 11:60631047-60633029 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryENSMUST00000117339
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary
ENSMUST00000117339 0.006±0.00 0.017±0.00 0.059±0.03 0.025±0.01 0.012±0.00 0.018±0.00 0.068±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000E2 CIL_0000E2_0002 CGP 11:60536381-60714186

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082327 pabpc4-001 protein_coding Danio_rerio 4e-39 167
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 1829
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 1766
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 2394
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 1766
ENST00000414338 RP11-393N21.1-001 processed_pseudogene Homo_sapiens 8e-30 134
ENST00000421687 PABPC4-017 protein_coding Homo_sapiens 0 1672
ENST00000437136 PABPC4-013 protein_coding Homo_sapiens 0 614
ENST00000461578 PABPC4-014 retained_intron Homo_sapiens 4e-35 150
ENST00000468476 PABPC4-006 retained_intron Homo_sapiens 8e-34 150
ENST00000470443 PABPC4-007 nonsense_mediated_decay Homo_sapiens 0 935
ENST00000474378 PABPC4-008 protein_coding Homo_sapiens 0 604
ENST00000477556 PABPC4-009 retained_intron Homo_sapiens 0 268
ENST00000482028 PABPC4-012 retained_intron Homo_sapiens 2e-27 126
ENST00000483770 PABPC4-016 retained_intron Homo_sapiens 0 361
ENST00000484555 PABPC4-015 retained_intron Homo_sapiens 0 233
ENST00000492468 PABPC4-005 retained_intron Homo_sapiens 0 366
ENST00000492519 PABPC4-010 retained_intron Homo_sapiens 0 326
ENST00000513632 PABPC4-020 retained_intron Homo_sapiens 0 237
ENST00000525045 PABPC4-023 retained_intron Homo_sapiens 0 342
ENST00000525669 PABPC4-022 retained_intron Homo_sapiens 0 510
ENST00000525751 PABPC4-019 retained_intron Homo_sapiens 0 468
ENST00000527718 PABPC4-021 protein_coding Homo_sapiens 0 684
ENST00000529216 PABPC4-025 processed_transcript Homo_sapiens 0 211
ENST00000530186 PABPC4-024 protein_coding Homo_sapiens 0 255
ENST00000549280 RP11-813P10.2-001 processed_pseudogene Homo_sapiens 0 375
ENST00000555663 CTD-2643K12.1-001 processed_pseudogene Homo_sapiens 0 379

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