C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13386
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117677 Gm13386-001 ENSMUSG00000083115 10090 - 2:28807708-28807831 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000117677
Transcript ID Ovary Placenta Testis
ENSMUST00000117677 56.146±0.00 30.451±0.00 6.284±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XE CIL_0002XE_0002 CGP 2:28692080-28813165
CIL_0007OT CIL_0007OT_0002 UCNEbase 2:28706607-28885151

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325307 HMGB3-001 protein_coding Homo_sapiens 2e-30 139
ENST00000414981 HMGB3P23-001 processed_pseudogene Homo_sapiens 4e-25 119
ENST00000417997 HMGB3P20-001 processed_pseudogene Homo_sapiens 5e-29 132
ENST00000419110 HMGB3-002 protein_coding Homo_sapiens 3e-31 139
ENST00000430118 HMGB3-004 protein_coding Homo_sapiens 2e-31 139
ENST00000444896 HMGB3P6-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000448905 HMGB3-201 protein_coding Homo_sapiens 4e-31 139
ENST00000451823 HMGB3P22-001 transcribed_processed_pseudogene Homo_sapiens 3e-26 122
ENST00000455596 HMGB3-003 protein_coding Homo_sapiens 4e-31 139
ENST00000457863 HMGB3P30-001 processed_pseudogene Homo_sapiens 6e-28 128
ENST00000511263 HMGB3P13-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000588063 RP11-861E21.3-001 processed_pseudogene Homo_sapiens 3e-26 122
ENST00000589177 HMGB3P27-001 processed_pseudogene Homo_sapiens 6e-28 128

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