C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3 pseudogene 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457863 HMGB3P30-001 ENSG00000213652 9606 + X:112689915-112690520 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartMuscleENST00000457863
Transcript ID Heart Muscle
ENST00000457863 0.100±0.00 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000717 CIL_000717_0001 CGP X:112630648-112840815

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 669
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 669
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 669
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 669
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 664
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 641
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 536
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000162465 Hmgb3-ps-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000117771 Gm5752-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000117677 Gm13386-001 processed_pseudogene Mus_musculus 6e-28 128

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