C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588063 RP11-861E21.3-001 ENSG00000267515 9606 + 18:12450447-12451042 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungOvaryTestisENST00000588063
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Ovary Testis
ENST00000588063 0.109±0.00 0.186±0.00 0.595±0.00 0.092±0.00 0.754±0.00 0.068±0.00 0.480±0.00 0.139±0.00 0.343±0.42 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZP CIL_0007ZP_0001 VISTA 18:11977697-12581651
CIL_00010Z CIL_00010Z_0001 CGP 18:12407896-12658134

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 638
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 638
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 638
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 638
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 632
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 623
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 520
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000155930 Gm8813-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000117771 Gm5752-001 processed_pseudogene Mus_musculus 0 401
ENSDART00000128242 hmgb3b-002 protein_coding Danio_rerio 2e-32 143
ENSDART00000024750 hmgb3b-001 protein_coding Danio_rerio 2e-32 143
ENSMUST00000117677 Gm13386-001 processed_pseudogene Mus_musculus 3e-26 122

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