C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419110 HMGB3-002 ENSG00000029993 9606 + X:150980509-150987877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungTestisENST00000419110
Transcript ID Brain Breast Colon Kidney Liver Lung Testis
ENST00000419110 3.283±0.00 0.893±0.00 3.452±0.00 3.299±0.00 0.761±0.00 1.043±0.00 6.916±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UN CIL_0000UN_0002 CGP X:150766337-150990775
CIL_0009DG CIL_0009DG_0001 VISTA X:150939220-151540580
CIL_0001AV CIL_0001AV_0001 CGP X:150980509-151181465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 793
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 791
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 791
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 791
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 791
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 776
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 654
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 640
ENSMUST00000155930 Gm8813-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000162465 Hmgb3-ps-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000117771 Gm5752-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000117677 Gm13386-001 processed_pseudogene Mus_musculus 3e-31 139

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