C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5054
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119351 Gm5054-001 ENSMUSG00000083812 10090 - 7:142305842-142306294 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENSMUST00000119351
Transcript ID Brain Testis
ENSMUST00000119351 0.026±0.00 0.126±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 435
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 351
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 418
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 385
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 335
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 431
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 335
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 259
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 385

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